Enrichissement sur chaque liste de DEGs pour les up et les down régulés. (Biological Process)
Essai sur une comparaison : effet CO2 en faible nitrate
load("./Data/AGIToEntrez.RDAta")
# OntologyEnrich <- function(ids, universe, plot = T){ # ids and universe must be
# entrez gene ids ego <- enrichGO(gene = ids, OrgDb = org.At.tair.db, ont = 'BP',
# universe = universe, pAdjustMethod = 'BH', pvalueCutoff = 0.01, qvalueCutoff =
# 0.05, readable = TRUE) # Elimine les redondances, en fusionnant les GO terms
# dont la similarite excede le cutoff simpOnt <- simplify(ego, cutoff=0.9,
# by='p.adjust', select_fun=min) result <- simpOnt@result if(plot){
# print(barplot(simpOnt, showCategory = 40, font.size = 10))
# print(emapplot(simpOnt, layout = 'kk')) } return(simpOnt) }
OntologyAnalysis <- function(comp) {
print("----------------------------------------------------------------")
print(paste0("------------------------", comp))
print("----------------------------------------------------------------")
filename = paste0(path, translateToOSX(comp), ".txt")
At <- read.csv(filename, h = T, sep = "\t")
up <- At[At$flc > 0, ]$entrezgene_id
down <- At[At$flc < 0, ]$entrezgene_id
print("------------------------ Up regulated --------------------------")
enrich_up <- OntologyEnrich(ids = up, universe = as.character(AGIToEntrez$entrezgene_id))
print("------------------------ Down regulated --------------------------")
enrich_down <- OntologyEnrich(ids = down, universe = as.character(AGIToEntrez$entrezgene_id))
print("------------------------ Comparison --------------------------")
entrezIDreg = list(Activated = up, Repressed = down)
sin <- compareOnt(entrezIDreg, universe = as.character(AGIToEntrez$entrezgene_id))
write.table(sin, quote = F, row.names = F, file = paste0(path, "GO_enrich_",
translateToOSX(comp), ".txt"), sep = "\t")
print(kable(sin[grepl("nitr", sin$Description), ]))
print(kable(sin[grepl("oxi", sin$Description), ]))
print(kable(sin[grepl("oxy", sin$Description), ]))
print(kable(sin[grepl("starv", sin$Description), ]))
}On remarque que la voie nitrate n’apparaîtt que dans les gènes downrégulés, ce qui est cohérent avec nos connaissances.
DEG CO2
[1] "----------------------------------------------------------------"
[1] "------------------------cNF" "------------------------CNF"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- ----------------------------------------------- ---------- ---------- ---------- ---------- ---------- ---------------------------- ------
10 Repressed GO:0071732 cellular response to nitric oxide 4/39 20/17755 0.0000001 0.0000041 0.0000026 820473/835707/819995/824495 4
12 Repressed GO:0071731 response to nitric oxide 4/39 21/17755 0.0000001 0.0000041 0.0000026 820473/835707/819995/824495 4
15 Repressed GO:1902170 cellular response to reactive nitrogen species 4/39 23/17755 0.0000002 0.0000049 0.0000031 820473/835707/819995/824495 4
34 Repressed GO:0010167 response to nitrate 4/39 195/17755 0.0008590 0.0091059 0.0057270 836533/836071/837327/819995 4
36 Repressed GO:0015706 nitrate transport 4/39 202/17755 0.0009794 0.0097331 0.0061214 836533/836071/837327/819995 4
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- -------------------------------------- ---------- ---------- --------- ---------- ---------- -------------------------------------------------------- ------
2 Activated GO:0001666 response to hypoxia 3/16 96/17755 8.15e-05 0.0046484 0.0036819 829495/840977/833986 3
9 Repressed GO:0034599 cellular response to oxidative stress 5/39 51/17755 1.00e-07 0.0000041 0.0000026 828613/820473/835707/819995/824495 5
10 Repressed GO:0071732 cellular response to nitric oxide 4/39 20/17755 1.00e-07 0.0000041 0.0000026 820473/835707/819995/824495 4
12 Repressed GO:0071731 response to nitric oxide 4/39 21/17755 1.00e-07 0.0000041 0.0000026 820473/835707/819995/824495 4
14 Repressed GO:0071456 cellular response to hypoxia 4/39 23/17755 2.00e-07 0.0000049 0.0000031 838508/837098/838017/832750 4
21 Repressed GO:0006979 response to oxidative stress 8/39 470/17755 6.80e-06 0.0001270 0.0000799 828613/843643/820473/826718/835707/819995/820049/824495 8
22 Repressed GO:0001666 response to hypoxia 4/39 96/17755 5.71e-05 0.0010087 0.0006344 838508/837098/838017/832750 4
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- --------------------------------------------- ---------- ---------- --------- ---------- ---------- ------------------------------------------------- ------
3 Activated GO:0036293 response to decreased oxygen levels 3/16 99/17755 8.93e-05 0.0046484 0.0036819 829495/840977/833986 3
4 Activated GO:0070482 response to oxygen levels 3/16 100/17755 9.20e-05 0.0046484 0.0036819 829495/840977/833986 3
7 Repressed GO:0034614 cellular response to reactive oxygen species 5/39 41/17755 0.00e+00 0.0000025 0.0000016 828613/820473/835707/819995/824495 5
16 Repressed GO:0036294 cellular response to decreased oxygen levels 4/39 25/17755 2.00e-07 0.0000059 0.0000037 838508/837098/838017/832750 4
17 Repressed GO:0071453 cellular response to oxygen levels 4/39 25/17755 2.00e-07 0.0000059 0.0000037 838508/837098/838017/832750 4
20 Repressed GO:0000302 response to reactive oxygen species 7/39 314/17755 4.80e-06 0.0000952 0.0000599 828613/820473/826718/835707/819995/820049/824495 7
23 Repressed GO:0036293 response to decreased oxygen levels 4/39 99/17755 6.44e-05 0.0010648 0.0006697 838508/837098/838017/832750 4
24 Repressed GO:0070482 response to oxygen levels 4/39 100/17755 6.70e-05 0.0010648 0.0006697 838508/837098/838017/832750 4
|Cluster |ID |Description |GeneRatio |BgRatio | pvalue| p.adjust| qvalue|geneID | Count|
|:-------|:--|:-----------|:---------|:-------|------:|--------:|------:|:------|-----:|[1] "----------------------------------------------------------------"
[1] "------------------------cnF" "------------------------CnF"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- ------------------------------------ ---------- ---------- ---------- ---------- ---------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
2 Activated GO:0010243 response to organonitrogen compound 52/610 436/17755 0.0000000 0.0000000 0.0000000 836281/839666/835193/828836/823551/830313/818588/837061/843688/828559/827464/839733/834770/28717292/843998/827463/835855/836103/28719408/820264/833755/819622/834429/820752/830424/832801/836099/834768/818762/825291/821495/836074/837224/824168/838981/823815/832285/817115/829160/843216/820924/829880/814962/829442/827892/837428/817680/843685/823752/820054/843396/815943 52
32 Activated GO:0010167 response to nitrate 18/610 195/17755 0.0001405 0.0049302 0.0045658 831262/843660/823994/815907/839392/834489/820078/819632/836480/839142/821309/827238/820429/843216/841650/839559/831787/828426 18
49 Repressed GO:0010167 response to nitrate 25/451 195/17755 0.0000000 0.0000000 0.0000000 837763/837327/820723/835085/827712/836533/826859/831117/829142/843377/816055/844135/836071/828131/824004/827834/821833/819425/838479/828805/836073/825400/844140/837274/832700 25
57 Repressed GO:0015706 nitrate transport 23/451 202/17755 0.0000000 0.0000002 0.0000001 837763/837327/820723/835085/827712/836533/826859/831117/829142/843377/816055/844135/836071/828131/827834/821833/819425/838479/828805/836073/825400/837274/832700 23
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
26 Activated GO:0001666 response to hypoxia 13/610 96/17755 0.0000241 0.0010413 0.0009643 828854/833986/821112/843568/831364/820165/835855/840977/823393/829495/843565/818002/816103 13
33 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 17/610 180/17755 0.0001620 0.0055125 0.0051051 828854/833986/821112/831364/820165/840977/823393/829495/824838/820924/829442/834015/829826/816103/819732/820054/815943 17
70 Repressed GO:0009404 toxin metabolic process 21/451 215/17755 0.0000001 0.0000063 0.0000052 844173/838288/842527/818031/823932/819386/822506/844174/844169/818902/827834/817628/826765/828470/820083/838289/828516/843328/844081/817562/843329 21
94 Repressed GO:0009407 toxin catabolic process 19/451 203/17755 0.0000011 0.0000262 0.0000217 844173/838288/842527/818031/823932/819386/822506/844174/844169/827834/826765/828470/820083/838289/828516/843328/844081/817562/843329 19
106 Repressed GO:0098754 detoxification 19/451 218/17755 0.0000032 0.0000614 0.0000507 844173/838288/842527/818031/823932/819386/822506/844174/844169/827834/826765/828470/820083/838289/828516/843328/844081/817562/843329 19
108 Repressed GO:0009636 response to toxic substance 28/451 419/17755 0.0000035 0.0000643 0.0000531 844173/819567/838288/842527/818031/823932/819386/822506/844174/844169/828520/827834/820102/826765/828470/830818/820083/838289/836301/828516/843328/844081/817562/832476/831917/820237/843329/835054 28
144 Repressed GO:0006733 oxidoreduction coenzyme metabolic process 24/451 422/17755 0.0002148 0.0025603 0.0021163 824459/842935/840138/819567/838632/841765/837904/844174/825246/839044/818226/830699/819261/828520/831183/818255/828805/839527/820816/825376/818231/829947/835991/835735 24
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------- ------
15 Activated GO:0036293 response to decreased oxygen levels 15/610 99/17755 0.0000014 0.0001011 0.0000936 828854/833986/821112/843568/831364/820165/835855/840977/823393/829495/843565/818002/843989/816103/819365 15
16 Activated GO:0070482 response to oxygen levels 15/610 100/17755 0.0000016 0.0001011 0.0000936 828854/833986/821112/843568/831364/820165/835855/840977/823393/829495/843565/818002/843989/816103/819365 15
27 Activated GO:2000377 regulation of reactive oxygen species metabolic process 19/610 199/17755 0.0000588 0.0023874 0.0022109 828854/833986/821112/831364/820165/840977/823393/833755/829495/824838/842958/820924/829442/834015/829826/816103/819732/820054/815943 19
131 Repressed GO:0046942 carboxylic acid transport 19/451 268/17755 0.0000588 0.0008061 0.0006663 818471/835085/826859/832703/829142/823892/842527/828131/818232/827834/825650/831563/831629/839690/839277/817562/831126/835735/821724 19
153 Repressed GO:0006099 tricarboxylic acid cycle 4/451 14/17755 0.0003359 0.0036729 0.0030359 820723/841765/819261/818860 4
|Cluster |ID |Description |GeneRatio |BgRatio | pvalue| p.adjust| qvalue|geneID | Count|
|:-------|:--|:-----------|:---------|:-------|------:|--------:|------:|:------|-----:|[1] "----------------------------------------------------------------"
[1] "------------------------cNf" "------------------------CNf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- --------------------------------------- ---------- ---------- ---------- ---------- ---------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
39 Activated GO:0010243 response to organonitrogen compound 51/887 436/17755 0.0000000 0.0000005 0.0000004 816209/843716/825779/824893/815943/816436/837800/818670/817778/827080/817084/832801/824807/818588/832320/843842/820033/817923/839126/838182/821052/829915/835353/817628/817197/838456/823752/830902/842923/821037/830401/831700/828481/825291/844421/836242/819248/817155/843810/830058/839184/843786/831037/824011/819715/839345/835638/819296/832524/835012/836277 51
79 Activated GO:0015706 nitrate transport 24/887 202/17755 0.0000743 0.0011902 0.0010726 823641/830599/839392/836199/823857/837328/820078/831117/818384/834489/832700/837868/843656/841650/840139/832794/829321/837420/823679/821309/817525/834584/834106/818986 24
99 Activated GO:0010167 response to nitrate 21/887 195/17755 0.0007718 0.0098617 0.0088873 823994/830599/839392/823857/820078/839559/831117/834489/832700/837868/841650/840139/832794/829321/837420/823679/821309/817525/834584/834106/818986 21
112 Repressed GO:0015706 nitrate transport 35/812 202/17755 0.0000000 0.0000000 0.0000000 841610/832353/827712/842043/837830/838365/841611/836073/826859/825400/827713/838850/835148/834851/816415/825091/838207/844069/838209/836480/828083/820894/820723/821613/837430/828707/826630/832127/836533/837482/836071/843660/827000/829140/843359 35
114 Repressed GO:0010167 response to nitrate 33/812 195/17755 0.0000000 0.0000000 0.0000000 841610/832353/827712/842043/837830/838365/841611/836073/826859/825400/827713/838850/835148/834851/816415/825091/844069/836480/828083/820894/820723/837430/828707/826630/836447/832127/836533/837482/836071/843660/827000/829140/843359 33
131 Repressed GO:1901699 cellular response to nitrogen compound 10/812 30/17755 0.0000005 0.0000197 0.0000178 820473/835707/827713/824516/833873/817362/842536/816478/839268/841405 10
135 Repressed GO:0071732 cellular response to nitric oxide 8/812 20/17755 0.0000014 0.0000506 0.0000457 820473/835707/827713/833873/817362/842536/816478/841405 8
139 Repressed GO:0071731 response to nitric oxide 8/812 21/17755 0.0000022 0.0000689 0.0000623 820473/835707/827713/833873/817362/842536/816478/841405 8
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- --------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------
16 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 32/887 180/17755 0.00e+00 0.0000000 0.0000000 843716/831065/824893/815943/816436/837800/818670/827080/824807/825805/832320/818348/843842/826796/820033/833998/835353/817628/817197/830902/841409/821037/828481/839523/836242/830788/843810/830058/817180/839345/835638/832524 32
25 Activated GO:0071456 cellular response to hypoxia 11/887 23/17755 0.00e+00 0.0000002 0.0000002 837098/824745/829327/839183/821193/841797/842139/817197/832596/817155/838508 11
35 Activated GO:0001666 response to hypoxia 21/887 96/17755 0.00e+00 0.0000003 0.0000003 837098/843716/831065/837800/824807/824745/825805/829327/839183/821193/841797/833998/842139/817197/841409/832596/830788/817155/838508/817180/832524 21
64 Activated GO:0042743 hydrogen peroxide metabolic process 37/887 325/17755 2.60e-06 0.0000517 0.0000466 843716/831065/824893/815943/816436/837800/818670/827080/824807/825805/832320/818348/843842/826796/820033/833998/835353/817628/817197/814849/830902/841409/821037/828481/839523/836242/830788/838991/841122/843810/838651/830058/817180/839345/835638/831227/832524 37
105 Repressed GO:0009404 toxin metabolic process 40/812 215/17755 0.00e+00 0.0000000 0.0000000 844169/822506/817491/838288/828228/831325/820083/818736/817497/817498/838289/844279/837075/818031/844081/823541/844174/843685/822252/828516/816040/831560/826765/814770/819386/817566/819314/821613/842261/817495/839920/831174/823932/831604/816765/843864/817591/821784/817493/814769 40
108 Repressed GO:0009407 toxin catabolic process 38/812 203/17755 0.00e+00 0.0000000 0.0000000 844169/822506/817491/838288/828228/831325/820083/818736/817497/817498/838289/844279/837075/818031/844081/823541/844174/822252/828516/816040/831560/826765/814770/819386/817566/819314/821613/842261/817495/839920/831174/823932/831604/843864/817591/821784/817493/814769 38
110 Repressed GO:0098754 detoxification 39/812 218/17755 0.00e+00 0.0000000 0.0000000 844169/822506/817491/838288/828228/831325/820083/818736/817497/817498/838289/844279/837075/818031/844081/823541/844174/822252/828516/816040/831560/826765/814770/819386/817566/819314/821613/842261/817495/839920/831174/823932/831604/843864/817591/821784/832290/817493/814769 39
120 Repressed GO:0009636 response to toxic substance 48/812 419/17755 0.00e+00 0.0000003 0.0000003 844169/822506/817491/838288/828228/831325/820083/818736/817497/817498/821935/838289/838365/844279/837075/818031/844081/823541/844174/822252/828516/816040/831560/826765/821239/817499/814770/819386/817566/836884/819314/821613/842261/817495/839920/831174/823932/827912/831604/843864/843660/817591/819567/821784/831883/832290/817493/814769 48
135 Repressed GO:0071732 cellular response to nitric oxide 8/812 20/17755 1.40e-06 0.0000506 0.0000457 820473/835707/827713/833873/817362/842536/816478/841405 8
139 Repressed GO:0071731 response to nitric oxide 8/812 21/17755 2.20e-06 0.0000689 0.0000623 820473/835707/827713/833873/817362/842536/816478/841405 8
162 Repressed GO:0034599 cellular response to oxidative stress 10/812 51/17755 8.79e-05 0.0017702 0.0015995 837075/820473/835707/827713/820728/833873/817362/842536/816478/841405 10
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- --------- ---------- ---------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
21 Activated GO:2000377 regulation of reactive oxygen species metabolic process 33/887 199/17755 0.00e+00 0.0000001 0.0000001 843716/831065/824893/815943/816436/837800/818670/827080/824807/825805/832320/818348/843842/826796/820033/842958/833998/835353/817628/817197/830902/841409/821037/828481/839523/836242/830788/843810/830058/817180/839345/835638/832524 33
37 Activated GO:0036294 cellular response to decreased oxygen levels 11/887 25/17755 0.00e+00 0.0000004 0.0000003 837098/824745/829327/839183/821193/841797/842139/817197/832596/817155/838508 11
38 Activated GO:0071453 cellular response to oxygen levels 11/887 25/17755 0.00e+00 0.0000004 0.0000003 837098/824745/829327/839183/821193/841797/842139/817197/832596/817155/838508 11
40 Activated GO:0036293 response to decreased oxygen levels 21/887 99/17755 0.00e+00 0.0000005 0.0000004 837098/843716/831065/837800/824807/824745/825805/829327/839183/821193/841797/833998/842139/817197/841409/832596/830788/817155/838508/817180/832524 21
42 Activated GO:0070482 response to oxygen levels 21/887 100/17755 0.00e+00 0.0000005 0.0000005 837098/843716/831065/837800/824807/824745/825805/829327/839183/821193/841797/833998/842139/817197/841409/832596/830788/817155/838508/817180/832524 21
67 Activated GO:0072593 reactive oxygen species metabolic process 39/887 364/17755 6.20e-06 0.0001167 0.0001052 843716/831065/824893/815943/816436/837800/818670/827080/824807/825805/832320/818348/843842/826796/820033/842958/833998/835353/817628/817197/814849/830902/841409/821037/828481/839523/836242/830788/824073/838991/841122/843810/838651/830058/817180/839345/835638/831227/832524 39
160 Repressed GO:0034614 cellular response to reactive oxygen species 9/812 41/17755 7.84e-05 0.0016286 0.0014715 837075/820473/835707/827713/833873/817362/842536/816478/841405 9
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------- ---------- ---------- --------- ---------- ---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
24 Activated GO:0009267 cellular response to starvation 40/887 285/17755 0.00e+00 0.0000002 0.0000002 814855/834355/818860/825779/824448/818013/823857/843205/823888/820078/818348/839559/824647/831795/825433/832137/834489/829251/816757/817604/832700/820898/843656/837351/821047/840139/829321/837420/842387/838651/818477/823679/827956/824384/834895/817525/821045/834943/836263/823370 40
31 Activated GO:0042594 response to starvation 40/887 292/17755 0.00e+00 0.0000003 0.0000002 814855/834355/818860/825779/824448/818013/823857/843205/823888/820078/818348/839559/824647/831795/825433/832137/834489/829251/816757/817604/832700/820898/843656/837351/821047/840139/829321/837420/842387/838651/818477/823679/827956/824384/834895/817525/821045/834943/836263/823370 40
122 Repressed GO:0010106 cellular response to iron ion starvation 22/812 114/17755 0.00e+00 0.0000005 0.0000004 841610/832353/827712/837830/841611/825400/827713/838850/834851/816415/825091/844069/836480/828083/820723/837430/828707/824865/826630/836071/827000/829140 22
155 Repressed GO:0042594 response to starvation 30/812 292/17755 3.09e-05 0.0007051 0.0006371 841610/832353/827712/842043/837830/841611/825400/827713/838850/844174/834851/816415/825091/844069/836480/828083/825442/820723/830816/837430/828707/824125/824865/826630/829943/834574/839907/836071/827000/829140 30[1] "----------------------------------------------------------------"
[1] "------------------------cnf" "------------------------Cnf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- ------------------------------------ ---------- ---------- ------- --------- ------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
3 Activated GO:0010243 response to organonitrogen compound 60/797 436/17755 0 0e+00 0e+00 835828/843192/828950/820901/818171/826730/817197/828481/827463/842430/838438/839184/838310/818505/817680/817194/832801/836797/825077/821052/839026/837033/836099/822119/834770/832660/835798/834570/827464/814903/816384/837061/838501/830457/823551/817084/822447/829032/818404/843584/829442/28720712/843688/824528/814962/827630/842281/820264/828418/817115/823400/843939/841606/818319/826738/836281/832285/834273/835855/818762 60
40 Activated GO:0010167 response to nitrate 29/797 195/17755 0 4e-07 3e-07 831262/821171/836026/843660/838478/836447/835406/814682/827712/834090/823994/829479/821531/827238/819995/825050/819088/827713/828707/837830/832127/829321/824238/830599/828083/834464/837697/828255/844135 29
41 Activated GO:0015706 nitrate transport 29/797 202/17755 0 8e-07 7e-07 831262/821171/836026/843660/838478/835406/814682/827712/834090/829479/821531/827238/819995/844274/823641/825050/819088/827713/828707/837830/832127/829321/824238/821613/830599/828083/834464/837697/844135 29
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
27 Activated GO:0071456 cellular response to hypoxia 12/797 23/17755 0.0000000 0.0000000 0.0000000 839183/835828/829327/839180/817197/836614/824745/816859/832596/838016/835855/838508 12
61 Activated GO:0098754 detoxification 26/797 218/17755 0.0000056 0.0001012 0.0000836 832290/814822/843192/817495/821227/821508/839295/837543/818143/843328/818505/819827/837075/836072/827238/818403/831560/841805/828470/825050/838289/827542/822447/821613/839515/820564 26
73 Activated GO:0009404 toxin metabolic process 25/797 215/17755 0.0000130 0.0001988 0.0001641 814822/843192/817495/821227/821508/839295/837543/818143/843328/818505/819827/818902/837075/836072/827238/818403/831560/841805/828470/838289/827542/822447/821613/839515/820564 25
75 Activated GO:0009407 toxin catabolic process 24/797 203/17755 0.0000146 0.0002168 0.0001790 814822/843192/817495/821227/821508/839295/837543/818143/843328/818505/819827/837075/836072/827238/818403/831560/841805/828470/838289/827542/822447/821613/839515/820564 24
115 Activated GO:0009636 response to toxic substance 35/797 419/17755 0.0003228 0.0031211 0.0025763 832290/814822/843192/817495/843660/821227/828481/821508/839295/837543/818143/843328/818505/834678/819827/837075/823994/836072/821531/827238/818403/831560/841805/835555/828470/825050/838289/827542/824354/822447/821613/839515/836437/820564/833552 35
136 Activated GO:0001666 response to hypoxia 12/797 96/17755 0.0012062 0.0098626 0.0081410 839183/835828/829327/839180/817197/836614/824745/816859/832596/838016/835855/838508 12
139 Repressed GO:0001666 response to hypoxia 24/470 96/17755 0.0000000 0.0000000 0.0000000 817180/840977/829495/833986/820165/829444/832206/821112/816295/818002/823393/829404/830979/828854/844047/831364/831065/822481/843568/816103/837800/840399/835587/838301 24
141 Repressed GO:0010310 regulation of hydrogen peroxide metabolic process 27/470 180/17755 0.0000000 0.0000000 0.0000000 817180/840977/829495/833986/820165/829444/832206/821112/816295/823393/832320/843810/828854/844047/824893/831364/818854/831065/822481/826796/816103/830058/837800/837178/835353/832563/836789 27
155 Repressed GO:0042743 hydrogen peroxide metabolic process 28/470 325/17755 0.0000000 0.0000027 0.0000023 817180/840977/829495/833986/820165/829444/832206/821112/816295/823393/832320/843810/828854/844047/824893/831364/818854/831065/822481/826796/829541/816103/830058/837800/837178/835353/832563/836789 28
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
17 Activated GO:0036294 cellular response to decreased oxygen levels 13/797 25/17755 0.0000000 0.0000000 0.0000000 839183/835828/829327/839180/817197/836614/824745/816859/843989/832596/838016/835855/838508 13
18 Activated GO:0071453 cellular response to oxygen levels 13/797 25/17755 0.0000000 0.0000000 0.0000000 839183/835828/829327/839180/817197/836614/824745/816859/843989/832596/838016/835855/838508 13
117 Activated GO:0036293 response to decreased oxygen levels 13/797 99/17755 0.0004757 0.0045214 0.0037322 839183/835828/829327/839180/817197/836614/824745/816859/843989/832596/838016/835855/838508 13
120 Activated GO:0070482 response to oxygen levels 13/797 100/17755 0.0005248 0.0048632 0.0040143 839183/835828/829327/839180/817197/836614/824745/816859/843989/832596/838016/835855/838508 13
137 Repressed GO:0036293 response to decreased oxygen levels 25/470 99/17755 0.0000000 0.0000000 0.0000000 817180/840977/829495/833986/820165/829444/832206/821112/816295/818002/823393/829404/819365/830979/828854/844047/831364/831065/822481/843568/816103/837800/840399/835587/838301 25
138 Repressed GO:0070482 response to oxygen levels 25/470 100/17755 0.0000000 0.0000000 0.0000000 817180/840977/829495/833986/820165/829444/832206/821112/816295/818002/823393/829404/819365/830979/828854/844047/831364/831065/822481/843568/816103/837800/840399/835587/838301 25
140 Repressed GO:2000377 regulation of reactive oxygen species metabolic process 29/470 199/17755 0.0000000 0.0000000 0.0000000 817180/840977/829495/833986/820165/829444/832206/821112/816295/823393/832320/840148/843810/828854/844047/824893/831364/818854/831065/822481/826796/829541/816103/830058/837800/837178/835353/832563/836789 29
152 Repressed GO:0072593 reactive oxygen species metabolic process 31/470 364/17755 0.0000000 0.0000008 0.0000007 817180/840977/829495/833986/820165/829444/832206/821112/816295/823393/832320/836372/840148/843810/828854/844047/824893/831364/818854/831065/822481/826796/840630/829541/816103/830058/837800/837178/835353/832563/836789 31
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- -------------------------------- ---------- ---------- ------- --------- ------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
8 Activated GO:0009267 cellular response to starvation 43/797 285/17755 0 0 0 824124/821171/836263/836026/820457/843205/830293/818723/838478/824864/835406/824865/814682/827712/838739/819165/839444/825442/838910/834090/830816/824754/819995/827118/825050/820547/821357/827713/837965/828707/837830/842774/829321/831147/817943/836187/842281/837890/834943/819332/828083/819869/844135 43
14 Activated GO:0042594 response to starvation 43/797 292/17755 0 0 0 824124/821171/836263/836026/820457/843205/830293/818723/838478/824864/835406/824865/814682/827712/838739/819165/839444/825442/838910/834090/830816/824754/819995/827118/825050/820547/821357/827713/837965/828707/837830/842774/829321/831147/817943/836187/842281/837890/834943/819332/828083/819869/844135 43DEG Nitrate
[1] "----------------------------------------------------------------"
[1] "------------------------cNF" "------------------------cnF"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- --------------------------------------- ---------- ---------- --------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
83 Repressed GO:0010243 response to organonitrogen compound 153/1596 436/17755 0.00e+00 0.0000000 0.0000000 843716/825513/818171/843810/832750/832801/822447/827080/838483/818670/838182/839666/817194/817197/838521/829442/838981/815943/817084/832662/816384/824608/821495/818588/836103/836277/826427/837414/843006/842430/831700/818409/824807/839735/816227/821904/837061/839126/816436/835798/830401/28719408/828418/835012/839184/838456/826884/825077/820054/828455/831037/832524/842931/836881/820355/816909/817155/838487/824405/836242/843993/817115/823902/837800/841587/821402/828481/836281/843786/824764/816783/837210/843500/824750/816209/817312/841605/839345/827896/818505/840317/828950/834545/820053/827834/818166/819684/824410/827435/840897/829100/28717292/816864/821198/825291/818429/843192/833894/837033/828713/830313/822147/818549/827831/825104/830424/835855/836074/814985/832660/835828/837224/818548/828843/842281/835412/823813/829103/824011/828015/839846/819056/816899/842733/821037/843939/827463/824408/820924/821717/841606/828836/834430/823815/841496/837576/824516/833727/823846/826771/820591/829282/818709/827622/831933/824528/831850/836865/816913/833881/829539/827088/821225 153
120 Repressed GO:0010167 response to nitrate 69/1596 195/17755 0.00e+00 0.0000000 0.0000000 828255/838478/827713/836531/820078/825050/823994/830599/836071/839392/841650/831262/837482/834489/821135/815907/828612/821829/834464/824608/827208/823857/818986/819088/821309/827238/834584/830518/817525/823713/817312/831650/831787/820429/843816/827834/839559/821314/830038/821531/817482/835190/828083/827757/835406/823679/828131/819045/824238/824148/819995/843022/819056/842563/814682/828707/837274/817445/836447/834090/830422/816833/820591/837868/828446/817787/822042/841477/837502 69
125 Repressed GO:0015706 nitrate transport 68/1596 202/17755 0.00e+00 0.0000000 0.0000000 838478/827713/836531/820078/825050/823641/830599/836071/839392/841650/831262/837482/834489/821135/828612/821829/834464/824608/827208/823857/818986/819088/823707/821309/827238/834584/830518/817525/823713/817312/831650/831787/820429/843816/827834/821314/830038/827470/821531/817482/835190/828083/827757/836199/835406/823679/828131/819045/824238/824148/819995/843022/819056/842563/814682/828707/837274/817445/834090/830422/816833/820591/837868/828446/817787/822042/841477/837502 68
195 Repressed GO:1901699 cellular response to nitrogen compound 14/1596 30/17755 1.00e-07 0.0000009 0.0000007 827713/820473/833873/821135/815907/835707/816909/842069/824495/841405/842281/819995/821717/824516 14
232 Repressed GO:0071732 cellular response to nitric oxide 9/1596 20/17755 2.52e-05 0.0002204 0.0001799 827713/820473/833873/821135/835707/842069/824495/841405/819995 9
236 Repressed GO:0071731 response to nitric oxide 9/1596 21/17755 4.05e-05 0.0003422 0.0002793 827713/820473/833873/821135/835707/842069/824495/841405/819995 9
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- ---------- ---------- ---------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
20 Activated GO:0009404 toxin metabolic process 25/569 215/17755 0.0000000 0.0000018 0.0000016 828470/818736/838289/822506/844081/844169/838288/817491/830154/843328/831325/818031/843329/844279/817497/828228/817498/820083/832052/817628/822298/844174/817495/825488/843685 25
28 Activated GO:0009407 toxin catabolic process 21/569 203/17755 0.0000024 0.0001115 0.0000985 828470/818736/838289/822506/844081/844169/838288/817491/843328/831325/818031/843329/844279/817497/828228/817498/820083/832052/844174/817495/825488 21
33 Activated GO:0009636 response to toxic substance 32/569 419/17755 0.0000056 0.0002159 0.0001907 828470/818736/838289/822506/844081/844169/838288/817491/843328/831325/818031/843329/844279/817497/828228/817498/820083/832052/821935/844174/832476/817495/817499/819567/834810/837441/817681/825488/835690/824661/830818/821983 32
34 Activated GO:0098754 detoxification 21/569 218/17755 0.0000075 0.0002832 0.0002502 828470/818736/838289/822506/844081/844169/838288/817491/843328/831325/818031/843329/844279/817497/828228/817498/820083/832052/844174/817495/825488 21
74 Activated GO:0009403 toxin biosynthetic process 4/569 12/17755 0.0004208 0.0068800 0.0060784 830154/817628/822298/843685 4
129 Repressed GO:0010310 regulation of hydrogen peroxide metabolic process 62/1596 180/17755 0.0000000 0.0000000 0.0000000 843716/822481/818171/843810/832750/831065/827080/817180/818670/830788/817197/829442/815943/839523/818221/831364/843006/818409/824807/839735/816436/826884/820054/824838/832524/820355/823393/828854/824405/836242/825805/823902/837800/828481/839345/833986/834015/820608/838044/818166/833998/818348/818429/833894/828713/821112/814985/828444/842281/824024/829103/830730/820165/839846/819056/816899/842733/821037/824408/820924/834430/826735 62
167 Repressed GO:0001666 response to hypoxia 38/1596 96/17755 0.0000000 0.0000000 0.0000000 838508/843716/822481/821193/832596/832750/831065/837098/817180/816859/824745/830788/817197/818221/831364/842139/824807/841797/832524/823393/817155/828854/825805/837800/836614/838017/818002/838016/833986/843565/833998/821112/839180/835855/835828/820165/824408/827694 38
173 Repressed GO:0071456 cellular response to hypoxia 18/1596 23/17755 0.0000000 0.0000000 0.0000000 838508/821193/832596/832750/837098/816859/824745/817197/842139/841797/817155/836614/838017/838016/839180/835855/835828/827694 18
178 Repressed GO:0042743 hydrogen peroxide metabolic process 69/1596 325/17755 0.0000000 0.0000000 0.0000000 843716/822481/818171/843810/832750/831065/827080/817180/818670/830788/817197/829442/815943/839523/818221/831364/843006/818409/824807/839735/816436/826884/820054/824838/832524/820355/823393/828854/824405/836242/825805/823902/837800/828481/839345/838652/833986/841567/834015/820608/838044/818166/833998/818348/818429/831227/833894/828713/821112/814985/828444/842281/824024/829103/830730/820165/825246/839846/819056/816899/842733/821037/824408/820924/818741/834430/826735/819272/838991 69
232 Repressed GO:0071732 cellular response to nitric oxide 9/1596 20/17755 0.0000252 0.0002204 0.0001799 827713/820473/833873/821135/835707/842069/824495/841405/819995 9
233 Repressed GO:0006979 response to oxidative stress 69/1596 470/17755 0.0000318 0.0002771 0.0002262 828613/827713/820473/843643/838483/826718/823994/833873/839666/836437/843389/839392/830637/841650/821135/835707/839515/834464/837980/818588/840454/836103/821047/828418/831856/826884/838052/817155/821578/836011/842069/841082/817115/816500/828481/821411/820564/838652/824495/832099/835341/841405/821531/831076/826791/835756/828713/829982/820163/827831/830424/836617/837805/830118/819995/842769/819331/827463/821625/834244/823846/826771/835106/826870/836286/837094/833881/829539/821225 69
236 Repressed GO:0071731 response to nitric oxide 9/1596 21/17755 0.0000405 0.0003422 0.0002793 827713/820473/833873/821135/835707/842069/824495/841405/819995 9
287 Repressed GO:0034599 cellular response to oxidative stress 12/1596 51/17755 0.0015438 0.0099147 0.0080936 828613/827713/820473/833873/830637/821135/835707/842069/820564/824495/841405/819995 12
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------
138 Repressed GO:2000377 regulation of reactive oxygen species metabolic process 63/1596 199/17755 0.0000000 0.0000000 0.0000000 843716/822481/818171/843810/832750/831065/827080/817180/818670/830788/817197/829442/815943/839523/818221/831364/843006/818409/824807/839735/816436/826884/820054/824838/832524/820355/823393/828854/824405/836242/825805/823902/837800/828481/839345/833986/834015/820608/838044/818166/833998/818348/818429/833894/828713/821112/842958/814985/828444/842281/824024/829103/830730/820165/839846/819056/816899/842733/821037/824408/820924/834430/826735 63
164 Repressed GO:0036293 response to decreased oxygen levels 39/1596 99/17755 0.0000000 0.0000000 0.0000000 838508/843716/822481/821193/832596/832750/831065/837098/817180/816859/824745/830788/817197/818221/831364/842139/824807/841797/832524/823393/817155/828854/825805/837800/836614/838017/818002/838016/843989/833986/843565/833998/821112/839180/835855/835828/820165/824408/827694 39
166 Repressed GO:0070482 response to oxygen levels 39/1596 100/17755 0.0000000 0.0000000 0.0000000 838508/843716/822481/821193/832596/832750/831065/837098/817180/816859/824745/830788/817197/818221/831364/842139/824807/841797/832524/823393/817155/828854/825805/837800/836614/838017/818002/838016/843989/833986/843565/833998/821112/839180/835855/835828/820165/824408/827694 39
168 Repressed GO:0036294 cellular response to decreased oxygen levels 19/1596 25/17755 0.0000000 0.0000000 0.0000000 838508/821193/832596/832750/837098/816859/824745/817197/842139/841797/817155/836614/838017/838016/843989/839180/835855/835828/827694 19
169 Repressed GO:0071453 cellular response to oxygen levels 19/1596 25/17755 0.0000000 0.0000000 0.0000000 838508/821193/832596/832750/837098/816859/824745/817197/842139/841797/817155/836614/838017/838016/843989/839180/835855/835828/827694 19
171 Repressed GO:0046942 carboxylic acid transport 68/1596 268/17755 0.0000000 0.0000000 0.0000000 818506/833954/833873/834898/838043/828726/839950/819044/841650/837482/824740/834078/824608/836277/842139/818409/839735/816436/820090/835012/824786/842931/820355/824405/836242/829946/824384/827238/841587/824581/831074/832490/817312/841605/818002/834185/844172/818505/821353/827834/821086/824410/844283/821198/827860/841286/835875/829982/818549/832562/828131/820538/836869/839125/829572/825139/832215/828524/831866/841606/843739/837576/818538/841830/828681/820591/832514/818576 68
186 Repressed GO:0072593 reactive oxygen species metabolic process 72/1596 364/17755 0.0000000 0.0000000 0.0000000 828613/843716/822481/818171/843810/832750/831065/827080/817180/818670/830788/817197/829442/815943/839523/818221/831364/843006/818409/824807/839735/816436/826884/820054/824838/832524/820355/823393/828854/824405/836242/825805/823902/837800/828481/839345/838652/833986/841567/834015/820608/838044/818166/833998/818348/844112/818429/831227/833894/828713/821112/842958/814985/828444/842281/824024/829103/830730/820165/825246/839846/819056/816899/842733/821037/824408/820924/818741/834430/826735/819272/838991 72
264 Repressed GO:0000302 response to reactive oxygen species 47/1596 314/17755 0.0003543 0.0025615 0.0020910 828613/827713/820473/826718/823994/833873/836437/843389/821135/835707/837980/840454/821047/831856/826884/817155/836011/842069/828481/821411/820564/838652/824495/832099/835341/841405/821531/831076/828713/829982/830424/836617/837805/819995/842769/819331/827463/821625/834244/823846/826771/835106/826870/837094/833881/829539/821225 47
269 Repressed GO:0034614 cellular response to reactive oxygen species 11/1596 41/17755 0.0007493 0.0052729 0.0043044 828613/827713/820473/833873/821135/835707/842069/820564/824495/841405/819995 11
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------- ---------- ---------- ------- --------- ------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
124 Repressed GO:0009267 cellular response to starvation 83/1596 285/17755 0 0 0 824865/838478/827713/820078/825050/824864/818723/817604/836071/818013/824448/834489/821135/814855/834353/828612/821829/827773/818409/821047/838907/827208/816227/826456/823857/824838/831795/815147/824384/836187/830518/817525/823713/831650/831787/824124/843816/838652/830293/821005/838910/839559/821314/830038/818348/835947/832137/840014/817482/835190/828083/819125/829172/835406/826833/828713/823679/840957/821045/829251/837890/842281/824148/842774/819995/843022/831684/837351/842563/834943/814682/828707/828399/821357/817445/834090/830422/816833/817787/841398/841477/837502/838739 83
127 Repressed GO:0042594 response to starvation 83/1596 292/17755 0 0 0 824865/838478/827713/820078/825050/824864/818723/817604/836071/818013/824448/834489/821135/814855/834353/828612/821829/827773/818409/821047/838907/827208/816227/826456/823857/824838/831795/815147/824384/836187/830518/817525/823713/831650/831787/824124/843816/838652/830293/821005/838910/839559/821314/830038/818348/835947/832137/840014/817482/835190/828083/819125/829172/835406/826833/828713/823679/840957/821045/829251/837890/842281/824148/842774/819995/843022/831684/837351/842563/834943/814682/828707/828399/821357/817445/834090/830422/816833/817787/841398/841477/837502/838739 83[1] "----------------------------------------------------------------"
[1] "------------------------CNF" "------------------------CnF"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- ------------------------------------ ---------- ---------- ------- --------- ------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
8 Repressed GO:0010167 response to nitrate 60/1019 195/17755 0 0 0 828255/816055/838478/825050/821829/837482/827834/828131/828083/824608/831650/843377/843816/836447/821135/828707/835085/830599/821833/832700/827208/841650/836531/836071/828612/842563/817312/822334/817787/834584/818986/818497/843740/837274/820078/821832/835406/827713/820723/834464/824004/837724/819088/831117/834106/816779/827712/821897/820591/844272/822411/844135/819056/834489/835679/844140/819425/821884/837095/824060 60
14 Repressed GO:0010243 response to organonitrogen compound 88/1019 436/17755 0 0 0 832750/843810/827080/839184/828418/818709/827834/838483/815943/843716/824608/816209/828481/825513/816436/831700/824764/816384/837414/820355/839735/818670/817039/817197/828455/818505/824528/818166/817312/818171/842527/816783/838182/832524/832662/835798/814985/836865/817194/820054/832801/824410/841587/835828/838521/816909/824408/843006/824011/821198/825077/837576/827896/839846/837800/837724/842931/836242/830840/836881/817084/818409/837210/839345/829442/826884/825104/820591/816864/827435/827831/834570/822411/838911/819056/821402/831037/832320/834545/835012/821495/828713/822447/828843/829103/838487/828348/842430 88
15 Repressed GO:0015706 nitrate transport 58/1019 202/17755 0 0 0 823641/816055/838478/825050/821829/837482/827834/828131/828083/824608/831650/843377/843816/821135/828707/835085/830599/821833/832700/827208/841650/836531/836071/828612/842563/838207/817312/822334/817787/834584/818986/818497/843740/837274/820078/821832/835406/827713/823707/820723/834464/837724/819088/831117/834106/816779/827712/821897/820591/844272/822411/844135/819056/834489/819425/836199/821884/824060 58
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- ------- --------- ------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
58 Repressed GO:0010310 regulation of hydrogen peroxide metabolic process 41/1019 180/17755 0 0e+00 0e+00 832750/843810/827080/817180/815943/843716/828481/816436/836498/831065/820355/839735/818670/817039/817197/818166/818171/818221/832524/814985/820054/824408/843006/839846/837800/836242/822481/818409/839345/829442/826884/839523/830788/822411/819056/832320/820608/828713/829103/830730/825805 41
87 Repressed GO:0071456 cellular response to hypoxia 14/1019 23/17755 0 0e+00 0e+00 832750/838508/832596/821193/837098/841797/817197/838016/824745/838017/836614/835828/842139/839180 14
102 Repressed GO:0001666 response to hypoxia 24/1019 96/17755 0 0e+00 0e+00 832750/838508/832596/817180/821193/843716/837098/831065/841797/817197/838016/824745/838017/836614/818221/832524/835828/824408/837800/842139/822481/839180/830788/825805 24
112 Repressed GO:0042743 hydrogen peroxide metabolic process 45/1019 325/17755 0 4e-07 3e-07 832750/843810/827080/817180/815943/825246/843716/828481/816436/836498/831065/820355/839735/818670/817039/817197/818166/818171/818221/832524/841567/814985/820054/824408/843006/814849/839846/837800/836242/822481/818409/839345/829442/826884/839523/830788/822411/819056/832320/842935/820608/828713/829103/830730/825805 45
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- ------- --------- -------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
79 Repressed GO:0046942 carboxylic acid transport 49/1019 268/17755 0e+00 0.0e+00 0.0e+00 833954/834898/839950/837482/824740/824786/827834/828131/824608/838043/818506/829671/816436/819044/831074/835085/818471/841044/829946/820355/839735/841650/834078/818505/817312/824384/828726/842527/836869/841830/824410/841587/833873/821198/837576/834185/837724/832490/842139/842931/836242/832215/818538/818409/820591/843739/835012/835518/829982 49
80 Repressed GO:2000377 regulation of reactive oxygen species metabolic process 41/1019 199/17755 0e+00 0.0e+00 0.0e+00 832750/843810/827080/817180/815943/843716/828481/816436/836498/831065/820355/839735/818670/817039/817197/818166/818171/818221/832524/814985/820054/824408/843006/839846/837800/836242/822481/818409/839345/829442/826884/839523/830788/822411/819056/832320/820608/828713/829103/830730/825805 41
92 Repressed GO:0036294 cellular response to decreased oxygen levels 14/1019 25/17755 0e+00 0.0e+00 0.0e+00 832750/838508/832596/821193/837098/841797/817197/838016/824745/838017/836614/835828/842139/839180 14
93 Repressed GO:0071453 cellular response to oxygen levels 14/1019 25/17755 0e+00 0.0e+00 0.0e+00 832750/838508/832596/821193/837098/841797/817197/838016/824745/838017/836614/835828/842139/839180 14
104 Repressed GO:0036293 response to decreased oxygen levels 24/1019 99/17755 0e+00 0.0e+00 0.0e+00 832750/838508/832596/817180/821193/843716/837098/831065/841797/817197/838016/824745/838017/836614/818221/832524/835828/824408/837800/842139/822481/839180/830788/825805 24
106 Repressed GO:0070482 response to oxygen levels 24/1019 100/17755 0e+00 0.0e+00 0.0e+00 832750/838508/832596/817180/821193/843716/837098/831065/841797/817197/838016/824745/838017/836614/818221/832524/835828/824408/837800/842139/822481/839180/830788/825805 24
118 Repressed GO:0072593 reactive oxygen species metabolic process 47/1019 364/17755 2e-07 1.6e-06 1.3e-06 832750/844112/843810/827080/817180/828613/815943/825246/843716/828481/816436/836498/831065/820355/839735/818670/817039/817197/818166/818171/818221/832524/841567/814985/820054/824408/843006/814849/839846/837800/836242/822481/818409/839345/829442/826884/839523/830788/822411/819056/832320/842935/820608/828713/829103/830730/825805 47
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
--- ---------- ----------- -------------------------------- ---------- ---------- ------- --------- ------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
47 Repressed GO:0009267 cellular response to starvation 56/1019 285/17755 0 0 0 834353/838478/825050/814855/821829/818723/824865/832137/830293/828083/817604/824864/834355/831650/843816/821135/828707/832700/815147/827208/836071/828612/842563/822334/824448/824384/827773/817787/842527/818497/820078/835406/827713/825442/826456/820723/843205/816141/838907/821047/818409/827712/819125/821005/821897/836187/839444/844135/829172/834489/819425/831795/828713/821884/835947/834943 56
49 Repressed GO:0042594 response to starvation 56/1019 292/17755 0 0 0 834353/838478/825050/814855/821829/818723/824865/832137/830293/828083/817604/824864/834355/831650/843816/821135/828707/832700/815147/827208/836071/828612/842563/822334/824448/824384/827773/817787/842527/818497/820078/835406/827713/825442/826456/820723/843205/816141/838907/821047/818409/827712/819125/821005/821897/836187/839444/844135/829172/834489/819425/831795/828713/821884/835947/834943 56[1] "----------------------------------------------------------------"
[1] "------------------------cNf" "------------------------cnf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------------- ---------- ---------- -------- --------- --------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
2 Activated GO:0010243 response to organonitrogen compound 145/2289 436/17755 0.0e+00 0.00e+00 0.00e+00 824893/843842/843810/817555/825291/825779/816209/817197/832320/838122/817778/843716/836610/830902/819248/817628/822298/842923/824807/829915/823752/843192/830058/817084/835353/837033/818670/839184/834545/825399/824011/828929/837800/839126/844421/818588/823902/837178/815943/821225/835828/836655/831700/820033/834836/818837/828420/816783/832524/816436/817923/836103/824746/842428/837576/831757/843584/830121/842420/844177/838310/828718/843777/831037/836789/836587/836797/825513/823560/823751/827080/816384/828418/829536/838182/28717292/818558/829933/831854/824528/838591/834603/816283/824255/843998/840098/839026/816227/838487/824920/821535/837428/824750/829442/835860/838483/839345/836433/827921/838456/841609/827834/828927/819715/830840/819296/835012/828455/818064/843006/836552/837528/821904/821037/830401/844033/841595/816864/843993/841496/832801/831850/826884/818409/836322/823846/819684/836242/28720712/827088/824115/838314/829700/835638/839666/840897/825077/827996/821495/837224/817194/825104/829100/829308/843500 145
234 Repressed GO:0015706 nitrate transport 61/1818 202/17755 0.0e+00 0.00e+00 0.00e+00 827712/837830/841610/828083/838209/836026/835406/822190/828707/841611/844069/837028/819995/829140/831262/816415/827713/838207/838365/831650/842043/832353/836073/838850/820894/837389/837430/817242/814682/834090/836531/817482/817637/821171/823707/821924/836480/832127/825050/821613/837482/829479/834464/821884/837724/843359/821314/823713/831599/832162/834439/832468/828246/825091/820591/843552/828612/834851/821531/818521/827000 61
236 Repressed GO:0010167 response to nitrate 59/1818 195/17755 0.0e+00 0.00e+00 0.00e+00 827712/837830/828255/841610/828083/836026/835406/822190/828707/841611/836447/844069/837028/819995/829140/831262/816415/827713/838365/831650/842043/832353/836073/838850/820894/837389/837430/817242/814682/834090/836531/817482/817637/821171/821924/836480/832127/825050/837482/829479/834464/821884/837724/843359/821314/823713/831599/832162/834439/832468/828246/825091/820591/843552/828612/834851/821531/818521/827000 59
283 Repressed GO:0071732 cellular response to nitric oxide 11/1818 20/17755 9.0e-07 1.93e-05 1.72e-05 833873/819995/827713/842536/830938/820473/817362/841405/816478/842069/815134 11
291 Repressed GO:0071731 response to nitric oxide 11/1818 21/17755 1.7e-06 3.22e-05 2.87e-05 833873/819995/827713/842536/830938/820473/817362/841405/816478/842069/815134 11
304 Repressed GO:1902170 cellular response to reactive nitrogen species 11/1818 23/17755 5.3e-06 8.83e-05 7.89e-05 833873/819995/827713/842536/830938/820473/817362/841405/816478/842069/815134 11
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
48 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 60/2289 180/17755 0.0000000 0.0000000 0.0000000 824893/843842/843810/817180/822481/817197/826796/832320/838122/833998/843716/830902/817628/822298/831065/824807/818854/830058/835353/818670/839523/818348/837800/820608/823902/837178/815943/820033/825805/832524/816436/824746/844177/843777/836789/841409/827080/839748/818558/838591/824246/840098/829442/839345/827921/816579/830788/843006/821037/826735/819732/826884/818409/836242/818221/824838/835638/829495/827996/829772 60
81 Activated GO:0001666 response to hypoxia 33/2289 96/17755 0.0000001 0.0000010 0.0000008 829327/839183/817180/822481/817197/838508/833998/843716/824745/830979/831065/839180/824807/841797/837800/837098/835828/821193/825805/832524/842139/840399/841409/829404/832596/816859/830788/828758/818221/829495/832497/829772/827687 33
86 Activated GO:0042743 hydrogen peroxide metabolic process 76/2289 325/17755 0.0000001 0.0000021 0.0000017 824893/843842/843810/817180/822481/817197/826796/832320/838122/833998/843716/830902/817628/822298/831065/824807/818854/830058/835353/818670/839523/818348/837800/820608/838652/823902/837178/815943/820033/816672/825805/832524/816436/824746/834504/844177/843777/836789/841409/827080/839748/818558/838591/824246/838651/832376/838622/840098/840895/837304/829442/831227/829452/825246/839345/827921/816579/824454/829541/830788/843006/821037/826735/841122/819732/826884/829661/818409/836242/829558/818221/824838/835638/829495/827996/829772 76
109 Activated GO:0071456 cellular response to hypoxia 13/2289 23/17755 0.0000009 0.0000116 0.0000093 829327/839183/817197/838508/824745/839180/841797/837098/835828/821193/842139/832596/816859 13
134 Activated GO:0006979 response to oxidative stress 94/2289 470/17755 0.0000076 0.0000844 0.0000676 842342/842114/824919/837429/842198/831856/818622/824802/838122/832145/834244/841082/830377/829915/825814/838710/837076/840148/822833/828805/818588/834678/838652/820049/838544/838212/837904/818566/821225/821047/819778/833779/824775/818685/836103/826807/839515/843584/821135/844177/837894/833777/836572/816757/832109/841687/828418/831560/832546/832147/820438/819331/834037/828623/833957/837304/843013/831241/838483/831075/829730/828881/835707/838052/830881/819402/830118/837528/831076/825376/825476/841804/822112/835756/826884/841789/829661/823846/829055/816578/823954/814643/817494/841849/831562/836093/839886/839666/835598/826616/818257/835019/843439/823942 94
138 Activated GO:0009404 toxin metabolic process 51/2289 215/17755 0.0000091 0.0000983 0.0000788 833862/818013/827860/817628/822298/824807/843192/843799/839295/819730/817496/831895/839950/827542/837543/828470/837576/839515/830154/817753/827238/841409/832858/817715/844172/831560/838965/824255/821854/820016/829955/820956/834871/821208/827834/819870/829316/818902/818269/831688/824082/828753/841433/837575/827972/831586/817494/827088/818143/834423/835852 51
168 Activated GO:0098754 detoxification 49/2289 218/17755 0.0000603 0.0005329 0.0004269 833862/818013/824802/827860/843192/843799/839295/819730/817496/840148/831895/839950/827542/837543/828470/837576/839515/817753/827238/841409/832858/817715/844172/831560/838965/824255/821854/820016/829955/820956/834871/821208/827834/819870/829316/818269/831688/824082/828753/841433/837575/827972/831586/817494/827088/832290/818143/834423/835852 49
169 Activated GO:0009636 response to toxic substance 82/2289 419/17755 0.0000628 0.0005515 0.0004417 833862/837429/818013/843027/831856/824802/827860/841082/829915/843192/843799/839295/819730/817496/837076/840148/834678/831895/839950/838652/820049/838212/827542/837543/828470/821047/837576/839515/817753/827238/836572/841409/832858/817715/816757/841687/844172/831560/838965/820438/824255/821854/819331/820016/828623/837304/829955/820956/834871/831075/821208/828881/827834/819870/819402/829316/818269/831688/831076/824082/828753/841433/837575/841789/827972/831586/823846/829055/816578/823954/817494/827088/836093/839886/832290/818143/826616/818257/834423/835019/835852/843439 82
171 Activated GO:0009407 toxin catabolic process 46/2289 203/17755 0.0000813 0.0007059 0.0005654 833862/818013/827860/843192/843799/839295/819730/817496/831895/839950/827542/837543/828470/837576/839515/817753/827238/841409/832858/817715/844172/831560/838965/824255/821854/820016/829955/820956/834871/821208/827834/819870/829316/818269/831688/824082/828753/841433/837575/827972/831586/817494/827088/818143/834423/835852 46
283 Repressed GO:0071732 cellular response to nitric oxide 11/1818 20/17755 0.0000009 0.0000193 0.0000172 833873/819995/827713/842536/830938/820473/817362/841405/816478/842069/815134 11
291 Repressed GO:0071731 response to nitric oxide 11/1818 21/17755 0.0000017 0.0000322 0.0000287 833873/819995/827713/842536/830938/820473/817362/841405/816478/842069/815134 11
316 Repressed GO:0098754 detoxification 42/1818 218/17755 0.0000416 0.0006112 0.0005457 838289/837075/822506/838288/844169/817491/831325/820083/818736/817497/844279/819386/821508/821227/818505/828613/828228/841805/818031/817498/817637/825050/823541/844174/823491/821613/822252/844081/822447/828516/817591/819314/816040/824130/825317/818936/839920/836597/839603/817636/832797/837058 42
319 Repressed GO:0009404 toxin metabolic process 41/1818 215/17755 0.0000650 0.0009269 0.0008276 838289/837075/822506/838288/844169/817491/831325/820083/818736/817497/844279/819386/821508/821227/818505/828228/841805/818031/817498/817637/816765/823541/844174/823491/821613/822252/844081/822447/828516/817591/819314/816040/824130/818936/839920/836597/839603/817636/832797/837058/843685 41
322 Repressed GO:0009407 toxin catabolic process 39/1818 203/17755 0.0000820 0.0011361 0.0010144 838289/837075/822506/838288/844169/817491/831325/820083/818736/817497/844279/819386/821508/821227/818505/828228/841805/818031/817498/817637/823541/844174/823491/821613/822252/844081/822447/828516/817591/819314/816040/824130/818936/839920/836597/839603/817636/832797/837058 39
336 Repressed GO:0034599 cellular response to oxidative stress 14/1818 51/17755 0.0004449 0.0054457 0.0048622 837075/833873/819995/827713/842536/830938/828613/820473/817362/841405/816478/842069/820728/815134 14
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
31 Activated GO:0046942 carboxylic acid transport 83/2289 268/17755 0.0000000 0.0000000 0.0000000 831537/824763/835085/827860/838122/835025/814828/836869/843739/834895/834806/829946/836310/819562/839950/830991/832562/827542/828681/818837/828420/818520/818718/816436/826916/842139/837576/832703/817013/841044/834652/829572/838695/824740/827238/822809/830781/822740/828726/844172/831560/821353/818506/843738/836067/824241/831444/837428/829955/829671/842421/841609/821114/832070/827834/819715/838363/835012/842880/836505/834780/824082/831193/816285/829301/844074/818409/828524/821596/836242/818232/843527/833901/839277/829700/818635/839125/834684/833954/839690/820090/842205/818471 83
51 Activated GO:2000377 regulation of reactive oxygen species metabolic process 63/2289 199/17755 0.0000000 0.0000000 0.0000000 824893/843842/843810/817180/822481/817197/826796/832320/838122/833998/843716/830902/817628/822298/831065/824807/818854/830058/835353/818670/839523/818348/837800/840148/820608/842958/823902/837178/815943/820033/825805/832524/816436/824746/844177/843777/836789/841409/827080/839748/818558/838591/824246/840098/829442/839345/827921/816579/829541/830788/843006/821037/826735/819732/826884/818409/836242/818221/824838/835638/829495/827996/829772 63
85 Activated GO:0036293 response to decreased oxygen levels 33/2289 99/17755 0.0000001 0.0000021 0.0000017 829327/839183/817180/822481/817197/838508/833998/843716/824745/830979/831065/839180/824807/841797/837800/837098/835828/821193/825805/832524/842139/840399/841409/829404/832596/816859/830788/828758/818221/829495/832497/829772/827687 33
90 Activated GO:0070482 response to oxygen levels 33/2289 100/17755 0.0000002 0.0000026 0.0000021 829327/839183/817180/822481/817197/838508/833998/843716/824745/830979/831065/839180/824807/841797/837800/837098/835828/821193/825805/832524/842139/840399/841409/829404/832596/816859/830788/828758/818221/829495/832497/829772/827687 33
102 Activated GO:0072593 reactive oxygen species metabolic process 81/2289 364/17755 0.0000004 0.0000064 0.0000052 824893/843842/843810/817180/824073/822481/817197/826796/824802/832320/838122/833998/843716/830902/817628/822298/831065/824807/818854/830058/835353/818670/839523/818348/837800/840148/820608/842958/838652/823902/837178/815943/820033/816672/825805/832524/816436/824746/834504/844177/843777/836789/841409/827080/839748/818558/838591/824246/838651/832376/838622/840630/840098/840895/837304/829442/831227/829452/825246/839345/827921/816579/824454/829541/830788/843006/821037/826735/841122/819732/826884/829661/818409/836242/829558/818221/824838/835638/829495/827996/829772 81
118 Activated GO:0036294 cellular response to decreased oxygen levels 13/2289 25/17755 0.0000030 0.0000376 0.0000301 829327/839183/817197/838508/824745/839180/841797/837098/835828/821193/842139/832596/816859 13
119 Activated GO:0071453 cellular response to oxygen levels 13/2289 25/17755 0.0000030 0.0000376 0.0000301 829327/839183/817197/838508/824745/839180/841797/837098/835828/821193/842139/832596/816859 13
196 Activated GO:1905039 carboxylic acid transmembrane transport 9/2289 20/17755 0.0004259 0.0032272 0.0025849 835025/832562/828681/817013/841044/834652/822809/821114/829301 9
325 Repressed GO:0034614 cellular response to reactive oxygen species 13/1818 41/17755 0.0001464 0.0019725 0.0017611 837075/833873/819995/827713/842536/830938/828613/820473/817362/841405/816478/842069/815134 13
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------- ---------- ---------- ------- --------- ------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
57 Activated GO:0009267 cellular response to starvation 77/2289 285/17755 0 0e+00 0e+00 817604/823888/843656/818013/827956/825779/824647/814855/831795/839444/820078/840139/814828/823857/842563/819332/839214/843161/834895/819730/838739/818348/834049/819165/832137/841398/838652/843632/821047/834110/818860/821135/843221/830422/816757/819869/838478/818477/825433/819609/838651/831147/816227/839349/839559/832670/834574/820956/834943/820547/835562/829251/821208/838503/835947/837502/817787/843280/828232/834489/817223/819120/816639/822075/828399/843497/820085/829661/837365/818409/821045/841856/836210/824838/834355/838479/839929 77
60 Activated GO:0042594 response to starvation 77/2289 292/17755 0 0e+00 0e+00 817604/823888/843656/818013/827956/825779/824647/814855/831795/839444/820078/840139/814828/823857/842563/819332/839214/843161/834895/819730/838739/818348/834049/819165/832137/841398/838652/843632/821047/834110/818860/821135/843221/830422/816757/819869/838478/818477/825433/819609/838651/831147/816227/839349/839559/832670/834574/820956/834943/820547/835562/829251/821208/838503/835947/837502/817787/843280/828232/834489/817223/819120/816639/822075/828399/843497/820085/829661/837365/818409/821045/841856/836210/824838/834355/838479/839929 77
228 Repressed GO:0010106 cellular response to iron ion starvation 46/1818 114/17755 0 0e+00 0e+00 827712/837830/836187/841610/828083/830293/836026/835406/822190/828707/824865/841611/844069/837028/819995/824864/829140/816415/827713/818723/831650/821357/838910/832353/838850/837389/837430/817242/814682/834090/823918/817482/821171/821924/836480/825050/821884/821314/823713/834439/828246/825091/843552/828612/834851/827000 46
256 Repressed GO:0042594 response to starvation 64/1818 292/17755 0 1e-07 1e-07 827712/837830/830816/836187/841610/828083/825442/830293/836026/835406/822190/828707/824865/841611/844069/837028/819995/824864/829140/816415/827713/818723/831650/821357/842043/838910/832353/838850/837389/837430/817242/837890/814682/834090/823918/817482/821171/837965/836263/821924/836480/825050/824125/844174/840424/814714/821884/817261/843205/821314/823713/834439/828246/825091/840181/843552/828612/821970/843444/834851/827000/825716/842604/835902 64[1] "----------------------------------------------------------------"
[1] "------------------------CNf" "------------------------Cnf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ------------------------------------ ---------- ---------- --------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------
2 Activated GO:0010243 response to organonitrogen compound 152/1450 436/17755 0.00e+00 0.0000000 0.0000000 835828/843192/837033/817197/823751/836797/839184/818171/817555/838122/817778/838310/843993/836103/822298/825513/817194/822119/838483/817628/843777/843584/825077/843685/827464/821225/839265/816384/843842/832353/817084/838501/827463/818404/839026/820901/825291/829700/824255/837224/838314/824893/842527/836610/835798/828642/834768/828418/824750/827831/824528/831757/834770/824188/821904/28720712/825399/836587/844177/828929/836655/829442/837428/842923/821239/842428/821901/834603/829915/843939/818588/817936/831700/839666/835855/824629/828718/839126/818837/840098/840897/826738/824746/824011/839733/831854/843810/823400/834836/818319/832285/829536/821134/830457/816283/828420/830313/827630/836789/818025/816783/818429/838591/818762/828516/837528/818558/820264/832660/828950/826730/823815/825104/829563/832801/839722/838981/823846/817513/836533/832750/832662/837178/823560/843492/832524/835179/817680/28717292/836074/823551/820357/824410/833755/823752/830121/827921/834273/828455/839345/832812/834545/843688/816899/821495/830902/831850/842420/819684/828381/825319/831037 152
143 Activated GO:0015706 nitrate transport 36/1450 202/17755 6.70e-06 0.0000627 0.0000486 843660/837328/827238/835148/838478/843656/838479/825400/842043/832353/821135/816779/827470/843377/844274/835085/819088/824238/843740/837327/837763/842563/834049/828805/836198/820078/838365/820429/840139/819632/832794/843323/836533/821613/820085/826859 36
192 Activated GO:0010167 response to nitrate 31/1450 195/17755 2.54e-04 0.0017518 0.0013603 843660/827238/835148/838478/838479/825400/842043/832353/821135/816779/843377/835085/819088/824238/843740/837327/837763/842563/834049/828805/836198/820078/844140/838365/820429/840139/819632/832794/836533/820085/826859 31
244 Repressed GO:0015706 nitrate transport 34/620 202/17755 0.00e+00 0.0000000 0.0000000 823641/817482/822190/839392/819995/832700/836026/829140/836199/837028/837389/831262/818986/831650/831117/826842/836531/834090/817242/823707/821884/837430/821314/819425/834464/817525/828612/838209/835406/823713/841650/827712/834794/844069 34
249 Repressed GO:0010167 response to nitrate 32/620 195/17755 0.00e+00 0.0000000 0.0000000 828255/817482/822190/839392/819995/832700/836026/829140/837028/837389/831262/818986/831650/831117/826842/836531/834090/817242/821884/837430/821314/819425/834464/817525/828612/835406/815907/823713/841650/827712/834794/844069 32
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------
24 Activated GO:0009404 toxin metabolic process 72/1450 215/17755 0.0000000 0.0000000 0.0000000 817495/831560/843192/818902/828470/827238/817566/817496/830154/827542/839950/828228/817498/844169/817491/833862/818269/831895/822298/814822/817628/831174/837543/839295/843685/818143/836072/839515/823932/819827/829955/824255/843328/817497/834871/818403/818013/838965/842527/828642/816040/838288/843799/831325/844173/820083/818736/837415/827860/820564/826765/844174/843864/827931/818429/828516/831024/837575/844279/821784/832858/817753/844081/821613/831688/817876/831586/819730/843947/817494/819314/822003 72
27 Activated GO:0009407 toxin catabolic process 66/1450 203/17755 0.0000000 0.0000000 0.0000000 817495/831560/843192/828470/827238/817566/817496/827542/839950/828228/817498/844169/817491/833862/818269/831895/814822/831174/837543/839295/818143/836072/839515/823932/819827/829955/824255/843328/817497/834871/818403/818013/838965/842527/828642/816040/838288/843799/831325/844173/820083/818736/837415/827860/820564/826765/844174/843864/827931/828516/831024/837575/844279/821784/832858/817753/844081/821613/831688/817876/831586/819730/843947/817494/819314/822003 66
28 Activated GO:0098754 detoxification 68/1450 218/17755 0.0000000 0.0000000 0.0000000 817495/831560/843192/832290/828470/827238/817566/817496/827542/839950/828228/817498/844169/817491/833862/818269/831895/814822/831174/837543/839295/818143/836072/839515/823932/819827/829955/824255/843328/817497/834871/818403/818013/838965/842527/828642/824802/816040/838288/843799/831325/844173/820083/818736/837415/827860/820564/826765/844174/843864/827931/828516/831024/837575/844279/821784/832858/817753/844081/821613/831688/817876/831586/819730/843947/817494/819314/822003 68
45 Activated GO:0009636 response to toxic substance 90/1450 419/17755 0.0000000 0.0000000 0.0000000 817495/831560/843192/832290/843660/834678/828470/827238/837429/817566/817496/843027/827542/839950/828228/817498/844169/817491/833862/818269/831895/814822/831174/837543/839295/818143/819331/836072/839515/823932/819827/829955/838652/824255/843328/817497/834871/818403/818013/838965/842527/828642/824802/816040/838288/843799/831325/844173/820083/818736/821239/837415/827912/827860/829915/820564/837076/835555/838365/817256/826765/844174/843864/827931/817499/828516/831024/837575/823846/844279/821784/832858/841082/817753/844081/830370/844087/837304/821613/833755/831688/817876/831586/819730/831856/827087/843947/817494/819314/822003 90
73 Activated GO:0071456 cellular response to hypoxia 15/1450 23/17755 0.0000000 0.0000000 0.0000000 835828/839180/829327/839183/817197/838508/816859/838016/824745/836614/835855/842139/832596/832750/838017 15
82 Activated GO:0006979 response to oxidative stress 80/1450 470/17755 0.0000000 0.0000000 0.0000000 831560/842342/843660/834678/820473/837429/838122/835707/829730/836103/833779/822119/838483/841849/843584/832145/819331/834244/821225/839515/827463/821135/842114/838710/838652/838544/831241/832546/833777/828418/827831/830377/824802/820728/844177/833957/822833/824919/821239/829915/820564/837076/818588/839666/828805/825814/818622/838052/835555/838365/817256/844174/817499/837894/837528/826730/842198/831559/823846/821784/841082/830370/825476/844087/826807/837304/833755/829547/819778/830118/828714/843865/815120/834816/831856/827087/817494/818167/840476/819314 80
87 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 41/1450 180/17755 0.0000000 0.0000000 0.0000000 817197/818171/839748/838122/822298/817628/843777/833998/843842/824893/839523/844177/829442/822481/818854/826735/824629/840098/824746/843810/821134/830457/840254/836789/818429/838591/818558/820608/832750/837178/832524/820357/824246/827921/834273/839345/844196/816899/830902/843305/827062 41
121 Activated GO:0001666 response to hypoxia 24/1450 96/17755 0.0000005 0.0000059 0.0000046 835828/839180/829327/839183/817197/836499/838508/828081/816859/827687/833998/838016/824745/836614/832838/822481/835855/830979/842139/832596/832750/832524/838017/826603 24
131 Activated GO:0042743 hydrogen peroxide metabolic process 52/1450 325/17755 0.0000021 0.0000211 0.0000164 817197/818171/839748/838122/822298/817628/843777/833998/843842/838652/829558/824893/839523/844177/829442/822481/818854/826735/824629/840098/829452/824746/832474/843810/827563/821134/830457/840254/836789/818429/838591/818558/820608/832750/837178/832524/820357/831798/837304/838622/824246/816672/827921/834273/842935/839345/844196/816899/830902/843305/827062/840895 52
157 Activated GO:0055114 oxidation-reduction process 53/1450 364/17755 0.0000264 0.0002250 0.0001747 840127/819288/817496/841944/843584/821135/834871/838314/838288/821806/820083/828805/819042/840098/824746/844174/842386/816953/836789/834660/838591/836525/831024/825294/822343/841653/818353/837848/837178/821784/842864/835179/830283/825180/825279/821613/824246/819778/841919/827921/820462/817876/832812/816359/819730/825797/843947/822359/842893/841793/830699/840895/820139 53
184 Activated GO:0009403 toxin biosynthetic process 6/1450 12/17755 0.0001763 0.0012480 0.0009691 818902/830154/822298/817628/843685/818429 6
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- ---------- ---------- ---------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
48 Activated GO:0046942 carboxylic acid transport 68/1450 268/17755 0.0000000 0.0000000 0.0000000 824763/831560/831537/827238/818471/827542/838122/844074/839950/842880/832703/830991/834895/843985/838695/821723/829572/834806/821353/836869/829955/829700/833954/819562/842527/836505/824740/830781/835085/836310/828681/837428/820363/827860/826860/818837/831126/834337/826916/835518/834652/828420/842139/818718/821416/829663/844279/821724/821676/842205/833901/842864/841044/836067/837344/824410/839125/831444/842477/828524/831281/822740/825139/828342/819556/819314/826859/836729 68
79 Activated GO:0036294 cellular response to decreased oxygen levels 15/1450 25/17755 0.0000000 0.0000000 0.0000000 835828/839180/829327/839183/817197/838508/816859/838016/824745/836614/835855/842139/832596/832750/838017 15
80 Activated GO:0071453 cellular response to oxygen levels 15/1450 25/17755 0.0000000 0.0000000 0.0000000 835828/839180/829327/839183/817197/838508/816859/838016/824745/836614/835855/842139/832596/832750/838017 15
99 Activated GO:2000377 regulation of reactive oxygen species metabolic process 42/1450 199/17755 0.0000000 0.0000001 0.0000001 817197/818171/839748/838122/822298/817628/843777/833998/843842/824893/839523/844177/829442/822481/818854/826735/824629/840098/824746/843810/821134/830457/840254/836789/818429/838591/818558/820608/832750/837178/832524/820357/833755/824246/827921/834273/839345/844196/816899/830902/843305/827062 42
123 Activated GO:0036293 response to decreased oxygen levels 24/1450 99/17755 0.0000010 0.0000106 0.0000082 835828/839180/829327/839183/817197/836499/838508/828081/816859/827687/833998/838016/824745/836614/832838/822481/835855/830979/842139/832596/832750/832524/838017/826603 24
124 Activated GO:0070482 response to oxygen levels 24/1450 100/17755 0.0000012 0.0000128 0.0000099 835828/839180/829327/839183/817197/836499/838508/828081/816859/827687/833998/838016/824745/836614/832838/822481/835855/830979/842139/832596/832750/832524/838017/826603 24
129 Activated GO:0046395 carboxylic acid catabolic process 58/1450 376/17755 0.0000018 0.0000189 0.0000147 820860/817496/830154/837385/833862/821732/843685/823668/816384/821135/834871/842774/818470/823888/838288/824238/844173/822833/820083/829442/831666/838362/829549/839883/824629/839508/829452/832447/832044/816630/844174/830457/834660/844180/831024/818181/821784/842864/830283/835039/830052/825279/821613/818941/816672/838352/827921/834273/820462/817876/832812/819730/814980/816830/825797/840141/843947/820499 58
133 Activated GO:0072593 reactive oxygen species metabolic process 56/1450 364/17755 0.0000030 0.0000298 0.0000232 817197/824073/818171/839748/838122/822298/817628/843777/833998/843842/838652/829558/824893/839523/824802/844177/829442/822481/818854/826735/824629/840098/829452/824746/832474/843810/827563/821134/830457/840254/836789/818429/838591/818558/820608/832750/837178/832524/820357/831798/837304/833755/838622/824246/816672/827921/834273/842935/839345/844196/816899/830902/824072/843305/827062/840895 56
206 Activated GO:0000302 response to reactive oxygen species 43/1450 314/17755 0.0005606 0.0036414 0.0028275 843660/834678/820473/837429/838122/835707/841849/843584/819331/834244/821225/827463/821135/838710/838652/838544/830377/824802/833957/821239/829915/820564/837076/825814/818622/835555/838365/817256/817499/842198/823846/830370/825476/844087/837304/833755/829547/828714/815120/831856/827087/818167/819314 43
214 Activated GO:0072350 tricarboxylic acid metabolic process 7/1450 21/17755 0.0009979 0.0062344 0.0048410 835707/830377/828805/819042/825180/815120/820139 7
260 Repressed GO:0010413 glucuronoxylan metabolic process 23/620 179/17755 0.0000001 0.0000027 0.0000025 814721/842455/818412/834223/836187/819995/839955/818607/842206/821884/843392/841920/826365/820328/830507/815907/823713/843555/831887/823712/834794/823397/833999 23
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------- ---------- ---------- --------- ---------- --------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
141 Activated GO:0009267 cellular response to starvation 46/1450 285/17755 6.20e-06 0.0000591 4.59e-05 839444/819165/838739/838478/831147/843656/819332/819869/838479/824647/834895/820547/825400/842043/832353/839349/824124/821135/838652/842774/818013/842527/834943/823888/843161/843632/817604/827956/843280/842563/834110/834049/839907/820078/834574/839214/844174/840139/840188/836210/841398/827118/822075/819730/820085/817943 46
149 Activated GO:0042594 response to starvation 46/1450 292/17755 1.19e-05 0.0001071 8.32e-05 839444/819165/838739/838478/831147/843656/819332/819869/838479/824647/834895/820547/825400/842043/832353/839349/824124/821135/838652/842774/818013/842527/834943/823888/843161/843632/817604/827956/843280/842563/834110/834049/839907/820078/834574/839214/844174/840139/840188/836210/841398/827118/822075/819730/820085/817943 46
233 Repressed GO:0010106 cellular response to iron ion starvation 31/620 114/17755 0.00e+00 0.0000000 0.00e+00 817482/836187/822190/819995/830293/832700/836026/829140/837028/837389/824864/831650/818723/826842/834090/817242/824865/821884/821357/837430/821314/819425/817525/828612/824510/835406/823713/827712/838910/834794/844069 31
245 Repressed GO:0042594 response to starvation 41/620 292/17755 0.00e+00 0.0000000 0.00e+00 817482/836187/822190/819995/830293/832700/836026/829140/837028/837389/843205/834355/824864/837351/831650/823370/818723/826842/834090/817242/824865/821884/821357/837430/821314/819425/817525/831795/840424/828612/824510/835406/837890/823713/827712/838910/828713/834794/844069/814714/821970 41DEG Fer
[1] "----------------------------------------------------------------"
[1] "------------------------cNF" "------------------------cNf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ------------------------------------ ---------- ---------- ------- --------- ------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
5 Activated GO:0010243 response to organonitrogen compound 131/2590 436/17755 0 0 0 839265/823902/818709/834768/822298/823751/817628/839733/824257/838438/835353/818404/820901/814903/822447/842923/821904/821239/844421/822119/828348/818964/817778/828642/817197/842428/828771/830457/824188/843192/829308/819248/836372/823892/827463/826730/827892/825513/824486/817936/835860/824516/844423/843885/832353/838501/836103/824807/822529/837277/842527/843685/833755/843993/835975/836610/834545/826427/842931/843006/823560/838521/828559/820264/830902/843842/841609/824629/814985/821901/842485/827831/824844/819093/832662/843492/829700/836533/843777/837428/843216/830840/838314/828418/838639/820357/823551/829160/826738/816899/827464/818933/818429/816864/834429/824484/823752/818025/837224/835638/828836/829563/836099/824255/828381/818166/836753/825077/828516/835855/824115/838122/828927/818549/816192/814817/837878/815862/841496/840897/832170/839126/821225/823400/843998/28717292/840317/832812/818548/843804/836587 131
201 Repressed GO:0015706 nitrate transport 81/3079 202/17755 0 0 0 836071/835406/834049/828612/817525/828707/823713/821829/820078/829140/827470/821314/829190/836198/831262/828083/841650/834584/836531/821884/830599/819088/842563/834489/838209/838856/834090/821171/839392/817787/823857/817515/817223/814682/837028/837697/831650/815896/819045/832700/821531/829129/821897/823707/816639/844272/822190/830038/816415/825377/828805/816779/830422/818384/817312/827208/820591/837327/817445/821833/834794/843552/829832/840139/821309/827757/834463/822334/822411/843377/837420/834851/841477/832670/822042/820894/837868/828446/837763/821832/821135 81
203 Repressed GO:0010167 response to nitrate 78/3079 195/17755 0 0 0 836071/835406/834049/828612/817525/828707/823713/821829/820078/829140/821314/829190/836198/831262/837095/836447/828083/841650/834584/836531/821884/830599/819088/842563/834489/838856/834090/821171/839392/817787/823857/817223/823994/814682/837028/837697/831650/815896/819045/832700/821531/829129/821897/828502/816639/844272/822190/830038/816415/825377/828805/816779/830422/817312/827208/820591/837327/817445/821833/834794/843552/840139/821309/827757/822334/822411/843377/837420/834851/841477/832670/822042/820894/837868/828446/837763/821832/821135 78
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- ---------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
2 Activated GO:0009404 toxin metabolic process 84/2590 215/17755 0.0000000 0.0000000 0.0000000 838289/838288/828228/817495/844169/837075/831325/831174/820083/817491/817566/822298/817497/817628/819827/822252/828470/822447/843328/843329/818736/822506/814770/844081/828642/818031/817498/831560/843192/823932/842261/843799/841432/839920/824807/827931/842527/843685/817494/827542/814769/836802/814822/817496/839515/820214/816040/818902/839691/844279/817591/826765/831688/828834/843947/831895/818879/818767/830154/837415/818429/841072/823927/836597/821613/819314/834871/837431/821508/837058/824255/844172/822003/827972/828516/843864/820298/833862/834056/827238/828753/817753/838776/821784 84
7 Activated GO:0098754 detoxification 80/2590 218/17755 0.0000000 0.0000000 0.0000000 838289/838288/828228/817495/844169/837075/831325/831174/820083/817491/817566/817497/819827/822252/828470/822447/843328/843329/818736/842650/822506/814770/844081/828642/818031/817498/831560/843192/823932/842261/843799/824802/841432/839920/827931/842527/817494/827542/814769/836802/814822/817496/839515/820214/816040/839691/844279/817591/826765/831688/843947/832290/831895/818879/818767/837415/841072/823927/836597/821613/819314/834871/837431/821508/837058/824255/844172/822003/827972/828516/843864/831928/820298/833862/834056/827238/828753/817753/838776/821784 80
9 Activated GO:0009407 toxin catabolic process 76/2590 203/17755 0.0000000 0.0000000 0.0000000 838289/838288/828228/817495/844169/837075/831325/831174/820083/817491/817566/817497/819827/822252/828470/822447/843328/843329/818736/822506/814770/844081/828642/818031/817498/831560/843192/823932/842261/843799/841432/839920/827931/842527/817494/827542/814769/836802/814822/817496/839515/820214/816040/839691/844279/817591/826765/831688/843947/831895/818879/818767/837415/841072/823927/836597/821613/819314/834871/837431/821508/837058/824255/844172/822003/827972/828516/843864/820298/833862/834056/827238/828753/817753/838776/821784 76
24 Activated GO:0001666 response to hypoxia 39/2590 96/17755 0.0000000 0.0000000 0.0000000 816103/829495/829327/836499/816295/823393/844047/840399/818002/828081/817180/840977/829444/833986/820165/829927/817197/828854/831364/832838/829161/826603/821112/822481/838301/824807/827687/839180/839183/832206/835587/827694/843565/836024/820643/830788/843568/835855/827786 39
26 Activated GO:0009636 response to toxic substance 109/2590 419/17755 0.0000000 0.0000000 0.0000000 838289/838288/828228/817495/844169/837075/831325/831174/820083/821935/817491/817566/817497/819827/822252/828470/822447/843328/835218/843329/821239/818736/842650/822506/814770/844081/828642/818031/836884/817498/831560/817598/843192/823932/842261/843799/824802/834678/841432/828641/835341/839920/827931/842527/833755/817494/827542/838365/814769/836802/814822/817496/839515/820214/831883/816040/839691/844279/835364/817591/826765/831688/843947/837429/834913/832290/831895/818879/827039/818767/837415/841072/823927/819567/817499/817052/826849/836597/821613/819314/835555/827952/834871/837431/821508/837058/824255/844172/837076/822003/827972/828516/843864/831928/820298/833862/844087/832476/816448/818868/831856/834056/827238/828753/817753/829054/838776/821784/829055 109
58 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 52/2590 180/17755 0.0000005 0.0000144 0.0000120 816103/823902/829495/822298/816295/817628/823393/838438/835353/844047/814903/817180/840977/829444/840253/833986/820165/817197/828854/831364/830457/823892/821112/822481/844423/824807/822529/837277/843006/815997/840254/830902/843842/824629/814985/832206/843777/820357/816899/824024/818429/835638/827062/830788/819732/818166/838122/839748/832170/827786/824838/837907 52
62 Activated GO:0042743 hydrogen peroxide metabolic process 80/2590 325/17755 0.0000011 0.0000262 0.0000219 816103/823902/829495/822298/816295/817628/841567/823393/838438/835353/844047/814903/832474/827563/817180/840977/829444/840253/839476/834842/833986/820165/817197/828854/831364/830457/823892/821112/822481/844423/824807/822529/837277/839747/843006/815997/840254/830902/843842/824629/814985/832206/843777/820630/832233/829558/837384/820357/832502/816899/824024/818429/842379/842935/837598/835638/840895/827062/816775/830788/842317/821451/819732/818166/836158/838122/839748/828027/821265/815830/839413/824454/832170/827786/827311/835017/838712/824838/837907/836400 80
96 Activated GO:0009403 toxin biosynthetic process 8/2590 12/17755 0.0000579 0.0008926 0.0007476 822298/817628/824807/843685/818902/828834/830154/818429 8
120 Activated GO:0006635 fatty acid beta-oxidation 42/2590 168/17755 0.0002501 0.0032135 0.0026916 838288/832820/820083/843600/843329/814770/827381/824423/817496/834660/839691/820593/843947/818879/820462/841072/842170/826792/836597/821613/841391/821815/834871/837431/829587/835403/820940/837166/835494/820298/842864/818239/839816/834056/824273/832812/844320/838776/830525/821784/839621/817175 42
133 Activated GO:0034440 lipid oxidation 44/2590 182/17755 0.0003982 0.0046168 0.0038670 838288/832820/820083/843600/843329/814770/841944/827381/824423/817496/834660/839691/820593/843947/838314/818879/820462/841072/842170/826792/836597/821613/841391/821815/834871/837431/829587/835403/820940/837166/835494/820298/842864/818239/839816/834056/824273/832812/844320/838776/830525/821784/839621/817175 44
135 Activated GO:0019395 fatty acid oxidation 42/2590 172/17755 0.0004267 0.0048738 0.0040823 838288/832820/820083/843600/843329/814770/827381/824423/817496/834660/839691/820593/843947/818879/820462/841072/842170/826792/836597/821613/841391/821815/834871/837431/829587/835403/820940/837166/835494/820298/842864/818239/839816/834056/824273/832812/844320/838776/830525/821784/839621/817175 42
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- --------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------
21 Activated GO:0036293 response to decreased oxygen levels 40/2590 99/17755 0.00e+00 0.0000000 0.0000000 816103/819365/829495/829327/836499/816295/823393/844047/840399/818002/828081/817180/840977/829444/833986/820165/829927/817197/828854/831364/832838/829161/826603/821112/822481/838301/824807/827687/839180/839183/832206/835587/827694/843565/836024/820643/830788/843568/835855/827786 40
27 Activated GO:0070482 response to oxygen levels 40/2590 100/17755 0.00e+00 0.0000000 0.0000000 816103/819365/829495/829327/836499/816295/823393/844047/840399/818002/828081/817180/840977/829444/833986/820165/829927/817197/828854/831364/832838/829161/826603/821112/822481/838301/824807/827687/839180/839183/832206/835587/827694/843565/836024/820643/830788/843568/835855/827786 40
30 Activated GO:0072593 reactive oxygen species metabolic process 96/2590 364/17755 0.00e+00 0.0000001 0.0000001 816103/823902/829495/822298/836868/816295/817628/841567/823393/838438/835353/844047/814903/824072/832474/827563/817180/840977/829444/836373/840253/839476/834842/833986/820165/817197/828854/831364/830457/836372/823892/817170/824802/821112/822481/840630/844423/824807/822529/837277/833755/839747/843006/815997/840254/830902/820214/843842/824629/814985/829641/842580/832206/843777/820630/816847/832233/829558/837384/820357/832502/816899/824024/844282/818429/842379/842935/837598/842958/835638/840895/827062/816775/830788/842317/821451/819732/818166/836158/838122/839748/831928/828027/821265/815830/824073/839413/824454/832170/827786/827311/835017/838712/824838/837907/836400 96
37 Activated GO:0046942 carboxylic acid transport 74/2590 268/17755 0.00e+00 0.0000008 0.0000007 826860/826859/843985/828064/830991/818002/833954/842880/836716/818964/832703/831560/824241/823892/819554/821353/819562/836869/842527/837363/827542/821723/818520/842931/836310/822809/828342/828681/828726/829301/835976/841609/814828/839580/843738/839139/823402/842485/833873/844279/829700/837428/831563/821373/825139/843739/832026/843321/843527/832215/834078/844074/837344/837581/835025/819314/821416/818471/831537/837482/829671/831866/842205/844172/838122/842864/818549/814675/824763/838695/827238/836070/821612/834895 74
50 Activated GO:2000377 regulation of reactive oxygen species metabolic process 57/2590 199/17755 2.00e-07 0.0000066 0.0000056 816103/823902/829495/822298/836868/816295/817628/823393/838438/835353/844047/814903/817180/840977/829444/840253/833986/820165/817197/828854/831364/830457/823892/821112/822481/844423/824807/822529/837277/833755/843006/815997/840254/830902/820214/843842/824629/814985/832206/843777/816847/820357/816899/824024/818429/842958/835638/827062/830788/819732/818166/838122/839748/832170/827786/824838/837907 57
107 Activated GO:0046395 carboxylic acid catabolic process 82/2590 376/17755 9.31e-05 0.0013414 0.0011236 838288/832820/820083/843600/818181/843329/836373/814770/830457/822833/838301/820331/824238/843685/835250/823888/827381/841217/831666/824423/817496/834660/818104/814980/824629/822530/831443/839691/833613/818470/820593/843947/815160/818879/830611/837757/817145/823668/830154/839883/844282/820462/841072/824484/837935/842170/826792/836597/821613/842774/819608/841391/821815/834871/837431/829587/835403/838440/820940/837166/835494/820298/833862/842864/843182/818239/843750/821732/839816/839022/834056/824273/832812/844320/838776/830525/821784/843725/836400/825386/839621/817175 82
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------- ---------- ---------- ---------- ---------- ---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
102 Activated GO:0009267 cellular response to starvation 66/2590 285/17755 0.0000692 0.0010463 0.0008764 824865/824864/830816/842043/823918/821357/818723/830293/831147/819995/826630/838910/843329/838850/836480/843221/820457/840181/827712/825400/825091/817943/830923/843816/829943/832353/843656/819332/842527/823888/815147/814853/840188/837965/834943/816833/834574/814828/835902/827713/817482/821924/836478/825868/843081/820723/827118/842387/819329/842774/828417/837830/838739/839214/843444/835562/834439/843280/824647/841856/844135/822159/843161/824838/839621/834895 66
115 Activated GO:0042594 response to starvation 66/2590 292/17755 0.0001479 0.0019689 0.0016491 824865/824864/830816/842043/823918/821357/818723/830293/831147/819995/826630/838910/843329/838850/836480/843221/820457/840181/827712/825400/825091/817943/830923/843816/829943/832353/843656/819332/842527/823888/815147/814853/840188/837965/834943/816833/834574/814828/835902/827713/817482/821924/836478/825868/843081/820723/827118/842387/819329/842774/828417/837830/838739/839214/843444/835562/834439/843280/824647/841856/844135/822159/843161/824838/839621/834895 66
225 Repressed GO:0010106 cellular response to iron ion starvation 48/3079 114/17755 0.0000000 0.0000000 0.0000000 836071/835406/834049/836187/828612/817525/828707/823713/821829/820078/829140/821314/839235/829190/828083/821884/842563/834489/834090/821171/817787/823857/817223/814682/827956/837028/831650/815896/832700/840014/821897/816639/822190/830038/816415/830422/827208/817445/834794/843552/840139/822334/837420/834851/841477/832670/821135/824510 48
238 Repressed GO:0042594 response to starvation 88/3079 292/17755 0.0000000 0.0000008 0.0000006 836071/835406/814855/834049/818013/818860/836187/828612/817525/828707/823713/821829/820078/829140/821314/839235/829190/825836/832163/831795/828083/821884/834355/831888/842563/834489/834090/840424/821171/817787/823857/824384/816757/817223/836210/838652/815657/814682/827773/837890/827956/823576/837028/821313/825442/829661/831650/834353/815896/832700/840014/821897/816639/822190/825716/830038/816415/837351/818348/830422/842944/828638/827208/837820/817445/834794/821244/843552/816141/816700/840139/821181/842604/832137/814714/822334/837420/834851/824340/841477/832670/823557/824612/817604/839907/821135/824510/821208 88[1] "----------------------------------------------------------------"
[1] "------------------------cnF" "------------------------cnf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ------------------------------------ ---------- ---------- ---------- ---------- ---------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
2 Activated GO:0010243 response to organonitrogen compound 275/4260 436/17755 0.0000000 0.0000000 0.0000000 823902/843716/822298/825513/817197/835353/824807/842923/843192/824893/843810/834545/824257/843842/817778/836610/819248/827080/825291/834768/843006/839126/826427/825779/821904/836103/844421/828418/829308/818709/818171/832320/843993/838122/842931/823751/818404/835828/817084/838182/828642/817628/830457/822447/838483/830902/818588/839184/842428/830840/832662/832524/839666/823752/843998/825077/835012/818409/816227/843777/816209/818964/824011/817194/832750/816864/815943/836587/818837/826884/828455/816436/824255/828929/838438/28717292/817555/829442/831700/838501/836372/820901/835860/820357/835798/837224/842527/824188/840317/839345/821495/837428/840897/821037/821225/827834/841496/823560/816384/839265/830121/838521/829100/825399/828771/831037/828420/828718/820033/836277/818429/841609/839026/834603/837800/818670/824608/832660/817923/818549/814985/824115/839735/824629/844177/836797/822529/824750/835855/843584/844423/843500/816899/829563/818933/824408/836753/827463/815862/828836/827088/818287/819093/844033/839733/818548/824516/841595/833755/838314/828927/829700/821239/837033/830058/840098/834836/829103/820264/827831/829536/824446/823846/836739/828381/831854/837277/826730/824709/831345/830401/824528/829539/837178/824844/832812/821901/838310/823964/820355/836751/828348/834646/836433/836655/827892/843939/827464/823639/841587/819296/832801/817155/833727/816283/829915/829379/834429/826409/835638/836533/827706/836865/827435/828559/827622/834923/824486/839722/818605/836322/819622/830396/820924/28720712/819260/825104/28719408/820249/824746/823892/829933/835193/833881/839846/843350/828713/816783/826771/824277/822147/843216/817935/818762/842430/827996/817513/823400/844163/820419/821535/821667/834273/819684/831546/836242/818194/820053/819215/814817/843688/836789/838114/843396/818025/836074/840140/816909/828481/830313/842733/825371/834770/837414/825189/823815/837210/826738/843782/825905/821134/817115/838674/837673/837528 275
167 Activated GO:0010167 response to nitrate 72/4260 195/17755 0.0000338 0.0003193 0.0002594 838478/828255/843221/837327/826859/827238/835085/843660/821135/815907/832794/843377/844140/820078/843816/820429/827834/816833/826630/824608/824238/823857/827713/819632/837502/836480/819995/824082/839559/830923/824004/835190/817482/837482/830518/825868/828805/843740/842043/842563/836533/825050/825400/820723/838479/829400/827446/818986/824156/843497/832162/830422/821725/843216/837274/840139/828426/843022/816055/824148/824060/818497/828131/834489/819329/828542/843143/837867/839142/831787/829479/823994 72
168 Activated GO:0015706 nitrate transport 74/4260 202/17755 0.0000360 0.0003378 0.0002744 837328/843656/838478/843221/837327/826859/823641/827238/835085/843660/821135/832794/843377/820078/843816/820429/827834/816833/826630/824608/824238/823857/827713/819632/837502/836480/819995/843323/824082/830923/835190/836199/817482/837482/830518/825868/828805/843740/842043/842563/836533/825050/825400/820723/838479/829400/827446/844274/818986/824156/843497/832162/830422/821725/843216/837274/832160/840139/828426/843022/816055/824148/824060/818497/828131/834489/819329/843143/827470/830883/837867/839142/831787/829479 74
406 Repressed GO:0015706 nitrate transport 68/3824 202/17755 0.0000426 0.0003537 0.0002773 835406/841610/837830/828083/841611/829140/821171/828707/838209/836026/844069/837028/816415/822190/821314/823713/827712/821884/820894/831650/817525/831262/837430/832353/814682/834090/836071/838207/817242/829190/828612/834851/817637/837763/843359/836531/843552/829129/829832/838856/832700/821829/823707/837389/837697/831599/815896/825377/820591/834463/821531/828246/826842/844272/838365/816779/832119/819045/817515/819088/834049/834794/819425/832127/836198/822334/841650/815792 68
453 Repressed GO:0010167 response to nitrate 64/3824 195/17755 0.0001616 0.0010813 0.0008478 835406/841610/837830/828083/841611/829140/821171/828707/836447/836026/844069/837028/816415/822190/821314/823713/827712/821884/837095/820894/831650/817525/831262/837430/832353/814682/834090/836071/817242/829190/828612/834851/817637/837763/843359/836531/843552/829129/838856/832700/821829/837389/837697/831599/815896/825377/820591/821531/828246/826842/844272/838365/828502/816779/832119/819045/819088/834049/834794/819425/832127/836198/822334/841650 64
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- --------- ---------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------
51 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 110/4260 180/17755 0.00e+00 0.0000000 0.0000000 822481/823902/843716/817180/822298/817197/835353/824807/820165/824893/831065/833986/843810/829495/843842/833998/829444/827080/840977/816103/843006/823393/816295/818171/832320/830788/831364/838122/839523/821112/817628/830457/830902/832206/832524/826796/828854/844047/818409/843777/824838/839748/832750/815943/826884/816436/838438/829442/820357/839345/821037/824024/820033/818429/837800/818670/814985/839735/824629/844177/822529/834015/844423/818221/818348/816899/824408/827786/829772/830058/840098/826735/829103/819732/837277/840254/837178/823964/820355/828444/836751/825805/820608/835638/820924/838044/824746/823892/841409/815997/839846/828713/837907/827062/827996/833310/834273/836242/818854/836789/824246/818903/838337/828481/842733/843803/825189/843181/821134/837673 110
58 Activated GO:0042743 hydrogen peroxide metabolic process 155/4260 325/17755 0.00e+00 0.0000000 0.0000000 822481/823902/843716/817180/822298/817197/835353/824807/820165/824893/831065/833986/843810/829495/843842/833998/829444/827080/840977/841567/816103/843006/823393/816295/818171/832320/830788/831364/838122/839523/821112/817628/830457/839476/830902/832206/832524/826796/828854/844047/818409/843777/824838/839748/839747/832750/834842/815943/831227/826884/816436/838438/829442/820357/829558/839345/827563/821037/824454/842935/824024/820033/818429/837800/818670/825246/814985/839735/824629/844177/822529/834015/844423/818221/818348/816899/824408/827786/829452/820630/841122/819272/840895/829772/832502/830058/840098/826735/829103/819732/837277/816672/838651/818766/840254/837178/838652/823964/820355/842379/828444/836751/825805/823795/829541/825831/832233/838712/820608/835638/832001/837598/820924/834504/838044/824746/823892/841409/815997/831798/839846/828713/837907/842344/816775/827062/827996/833310/834273/836242/837590/832474/842697/837384/828027/814849/822402/818854/836789/824246/818903/838337/828481/842733/827228/843803/838940/838622/825189/843181/829460/821134/842317/818396/837673 155
71 Activated GO:0001666 response to hypoxia 64/4260 96/17755 0.00e+00 0.0000000 0.0000000 829327/822481/843716/839180/817180/817197/838508/824807/820165/831065/833986/829495/833998/829444/840977/816103/823393/816295/830788/831364/835828/821112/840399/832596/839183/842139/828081/818002/832206/832524/828854/844047/837098/832750/816859/827694/841797/836499/826603/837800/829927/821193/835855/818221/824408/824745/827786/832838/838301/829772/830979/827687/836614/823964/825805/817155/829404/835587/841409/843565/840184/843568/829161/838940 64
94 Activated GO:0071456 cellular response to hypoxia 21/4260 23/17755 0.00e+00 0.0000000 0.0000000 829327/839180/817197/838508/835828/832596/839183/842139/837098/832750/816859/827694/841797/829927/821193/835855/824745/836614/817155/843568/829161 21
95 Activated GO:0009404 toxin metabolic process 96/4260 215/17755 0.00e+00 0.0000000 0.0000000 831174/822298/824807/843799/843192/817495/817566/833862/827931/839515/837543/827860/839950/828228/844172/827542/839295/843328/817753/828642/817628/827238/822447/814822/823932/819827/817496/831560/838288/824255/831895/844169/828753/842527/827834/827972/817494/818902/822252/820956/841432/834871/818013/818429/814770/843947/818879/839691/831688/827088/842261/824082/818767/843329/837075/837415/823927/828470/819730/831325/817876/831024/837431/817155/818269/818143/836802/830154/829955/828834/817683/841072/841409/820083/843350/820016/820214/816040/838965/820564/818403/814769/838114/829025/825044/826765/821854/829338/839920/829316/836072/822003/820298/817715/839644/835379 96
104 Activated GO:0006979 response to oxidative stress 174/4260 470/17755 0.00e+00 0.0000000 0.0000000 835707/842114/842342/832145/831856/824802/839515/833957/834244/821047/832820/836103/828418/837429/826718/841849/838122/837894/838483/818588/829730/830377/834678/818566/839666/843660/837904/821135/832109/831560/824919/826884/838752/835102/822833/827016/821225/819331/817494/835656/836884/816478/842069/815160/844177/829055/827713/843584/817598/828641/830118/837076/838052/835341/820728/819995/843389/827786/827463/833755/821239/837075/842769/836286/823954/829641/827831/815023/820049/840004/839621/823846/818685/816578/831076/826730/844087/829539/838652/818257/823964/835019/817170/835756/835218/828805/838224/841082/837252/817155/840148/829915/835571/828053/835364/828714/829652/841804/821578/825817/819784/828623/818562/825476/833486/831925/838544/837405/829623/840115/837094/833881/828713/832845/824493/826771/841789/831075/828881/816500/843013/824739/820292/820473/820564/821974/827952/831563/830638/836011/826870/843258/833779/821921/837531/835106/831562/833777/826616/819235/831993/832267/816475/819402/838212/818868/832147/836617/829059/828481/830587/827412/821625/827903/819778/816949/819767/822041/825452/814729/836572/843439/820985/831377/814643/839886/826304/831559/828616/844178/817115/823994/837528/817049 174
105 Activated GO:0098754 detoxification 95/4260 218/17755 0.00e+00 0.0000000 0.0000000 831174/843799/843192/832290/817495/824802/817566/833862/827931/839515/837543/827860/839950/828228/844172/827542/839295/843328/817753/828642/827238/822447/814822/823932/819827/817496/831560/842650/838288/824255/831895/844169/828753/842527/827834/827972/817494/822252/820956/841432/834871/818013/814770/843947/818879/839691/831688/827088/842261/824082/818767/843329/837075/837415/823927/828470/819730/831325/817876/831024/837431/817155/818269/840148/818143/836802/829955/825050/817683/841072/837405/841409/820083/843350/820016/820214/816040/838965/820564/818403/814769/838114/829025/825044/826765/821854/829338/839920/829316/836072/822003/820298/817715/839644/835379 95
108 Activated GO:0034440 lipid oxidation 82/4260 182/17755 0.00e+00 0.0000000 0.0000000 832820/841944/817496/821135/834660/838288/843077/824755/842170/820956/835494/834871/814770/843947/824336/818879/839691/843584/843600/820462/818239/830525/827088/830283/838314/829587/843329/827381/839816/839621/824423/837099/819158/819730/827314/817251/832812/817876/831024/837431/826792/829268/836635/819671/829433/817683/842864/844320/841072/820083/837094/824273/832260/820016/818584/829022/820593/835159/824111/824798/816808/834346/821815/830373/842741/842073/838989/834552/829025/825044/817175/829059/819767/836227/825452/837166/837088/820298/834026/838782/836138/814630 82
111 Activated GO:0009407 toxin catabolic process 89/4260 203/17755 0.00e+00 0.0000000 0.0000000 831174/843799/843192/817495/817566/833862/827931/839515/837543/827860/839950/828228/844172/827542/839295/843328/817753/828642/827238/822447/814822/823932/819827/817496/831560/838288/824255/831895/844169/828753/842527/827834/827972/817494/822252/820956/841432/834871/818013/814770/843947/818879/839691/831688/827088/842261/824082/818767/843329/837075/837415/823927/828470/819730/831325/817876/831024/837431/817155/818269/818143/836802/829955/817683/841072/841409/820083/843350/820016/820214/816040/838965/820564/818403/814769/838114/829025/825044/826765/821854/829338/839920/829316/836072/822003/820298/817715/839644/835379 89
112 Activated GO:0006635 fatty acid beta-oxidation 77/4260 168/17755 0.00e+00 0.0000000 0.0000000 832820/817496/834660/838288/824755/842170/820956/835494/834871/814770/843947/824336/818879/839691/843600/820462/818239/830525/827088/830283/829587/843329/827381/839816/839621/824423/837099/819158/819730/827314/817251/832812/817876/831024/837431/826792/829268/836635/819671/829433/817683/842864/844320/841072/820083/837094/824273/832260/820016/818584/829022/820593/835159/824111/824798/816808/834346/821815/830373/842741/842073/838989/834552/829025/825044/817175/829059/819767/836227/825452/837166/837088/820298/834026/838782/836138/814630 77
114 Activated GO:0019395 fatty acid oxidation 78/4260 172/17755 0.00e+00 0.0000000 0.0000000 832820/817496/821135/834660/838288/824755/842170/820956/835494/834871/814770/843947/824336/818879/839691/843600/820462/818239/830525/827088/830283/829587/843329/827381/839816/839621/824423/837099/819158/819730/827314/817251/832812/817876/831024/837431/826792/829268/836635/819671/829433/817683/842864/844320/841072/820083/837094/824273/832260/820016/818584/829022/820593/835159/824111/824798/816808/834346/821815/830373/842741/842073/838989/834552/829025/825044/817175/829059/819767/836227/825452/837166/837088/820298/834026/838782/836138/814630 78
121 Activated GO:0009636 response to toxic substance 154/4260 419/17755 0.00e+00 0.0000000 0.0000000 831174/843799/843192/832290/817495/831856/824802/817566/833862/827931/839515/821047/837543/827860/837429/839950/828228/844172/827542/839295/843027/843328/817753/828642/827238/822447/814822/834678/823932/819827/843660/817496/831560/842650/838288/824255/831895/844169/828753/842527/827834/827972/819331/817494/836884/822252/820956/841432/834871/818013/814770/843947/829055/818879/839691/817598/828641/837076/831688/835341/843389/827088/842261/824082/818767/833755/843329/821239/837075/823954/820049/823846/816578/837415/823927/831076/828470/819730/844087/831325/838652/818257/835019/817876/831024/837431/835218/841082/817155/818269/840148/818143/829915/836802/829955/825050/835364/817683/841072/828623/833486/837405/841409/820083/843350/828713/826771/841789/820016/831075/828881/820214/816040/821935/838965/820564/827952/818403/836011/826870/814769/835106/826616/838114/831993/832267/819402/838212/818868/829025/825044/836617/828481/826765/821854/822041/814729/829338/836572/843439/839920/831377/829316/836072/822003/839886/826304/820298/844178/817715/839644/823994/835379/817049 154
124 Activated GO:0055114 oxidation-reduction process 136/4260 364/17755 0.00e+00 0.0000001 0.0000001 816381/819288/822341/832820/841944/840127/831364/844047/840201/817496/821135/834660/838288/818353/843077/816359/824755/842170/838540/820956/835494/834871/814770/843947/818772/819185/821806/824336/818879/839691/843584/843600/820462/837848/817208/818239/830525/827088/843129/840895/830283/838314/829587/842514/843329/827381/840098/839816/839621/824423/842016/824572/837099/819158/832370/819730/827314/837178/817251/825793/832812/836751/817876/831024/837431/828805/831183/828893/832619/826792/829268/836635/819671/842893/829433/819042/820723/820139/825294/817683/842864/844320/841072/825180/835809/824746/820083/837094/824273/832260/820016/843942/821805/843308/827996/841919/818584/829022/828388/841653/818194/820593/835159/829490/824111/824798/816808/836789/821268/834346/821815/824246/830373/842741/842073/838989/834552/829025/825044/817175/829059/819778/819767/836227/838984/825452/837166/837088/820298/834026/838782/843206/841793/815111/836138/814630 136
141 Activated GO:0000303 response to superoxide 25/4260 43/17755 1.70e-06 0.0000188 0.0000153 824802/833957/841849/827016/827786/842769/839621/829539/817170/838224/840148/828714/825476/837405/840115/837094/833881/824739/843258/819235/816475/829059/830587/821625/827903 25
489 Repressed GO:0006733 oxidoreduction coenzyme metabolic process 118/3824 422/17755 9.58e-04 0.0055706 0.0043676 828439/822259/816765/821560/837095/836213/830399/830336/817637/827908/829376/838632/831100/821227/843988/822604/843546/844174/826975/842536/818255/835369/829438/821659/820980/824510/842905/827230/822181/820639/827011/831039/828213/832096/824077/825376/835035/818978/816756/820845/825716/832130/830880/836525/825316/821870/844228/817570/818382/827028/841512/820816/828409/839273/843835/816943/837752/831343/841757/829314/827145/826716/825524/830008/814779/830052/815120/831020/819639/819757/843797/840138/837304/817986/843414/820461/822343/837376/821951/828520/836783/824441/814686/824034/817556/820775/821346/838075/832195/819187/839636/825259/829697/833970/821584/833969/839203/819011/825527/824599/837113/826551/834602/824767/843871/820628/824318/829947/834749/829220/825317/816585/836181/830517/838927/825073/836110/819567 118
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- -------- --------- --------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
44 Activated GO:2000377 regulation of reactive oxygen species metabolic process 119/4260 199/17755 0.0e+00 0.00e+00 0.00e+00 822481/823902/843716/817180/822298/817197/835353/824807/820165/824893/831065/833986/843810/829495/843842/833998/829444/827080/840977/816103/843006/823393/816295/818171/832320/830788/842958/831364/838122/839523/821112/817628/830457/830902/832206/832524/826796/828854/844047/836868/818409/843777/824838/839748/832750/815943/826884/816436/838438/829442/820357/839345/821037/824024/820033/818429/837800/818670/814985/839735/824629/844177/822529/834015/844423/818221/818348/816899/824408/827786/833755/829772/830058/840098/826735/829103/819732/837277/840254/837178/823964/820355/828444/836751/825805/829541/840148/820608/835638/820924/838044/824746/823892/841409/815997/840115/839846/828713/837907/827062/820214/827996/833310/834273/836242/818854/836789/824246/818903/838337/816847/828481/842733/843803/814729/825189/843181/821134/837673 119
54 Activated GO:0072593 reactive oxygen species metabolic process 172/4260 364/17755 0.0e+00 0.00e+00 0.00e+00 822481/823902/843716/817180/822298/817197/835353/824807/820165/824893/831065/824802/833986/843810/829495/843842/833998/829444/827080/840977/841567/816103/843006/823393/816295/818171/832320/830788/842958/831364/838122/839523/821112/817628/830457/839476/830902/832206/832524/826796/828854/844047/836868/818409/843777/824838/839748/824073/839747/840630/832750/834842/815943/831227/826884/816436/838438/829442/836372/820357/829558/839345/827563/821037/836373/824454/842935/824024/820033/818429/837800/818670/825246/814985/839735/824629/844177/822529/834015/844423/818221/818348/816899/824408/827786/829452/820630/841122/819272/840895/833755/829772/832502/830058/840098/826735/829103/829641/819732/837277/824072/816672/838651/818766/840254/837178/838652/823964/820355/842379/828444/836751/817170/825805/823795/829541/840148/825831/832233/838712/820608/835638/832001/837598/820924/834504/838044/824746/823892/837405/841409/815997/840115/831798/839846/828713/837907/842344/816775/827062/820214/827996/833310/834273/836242/837590/832474/842697/837384/828027/814849/822402/818854/836789/824246/818903/838337/816847/828481/842733/827228/843803/838940/814729/838622/825189/843181/829460/821134/842317/818396/837673 172
57 Activated GO:0046942 carboxylic acid transport 135/4260 268/17755 0.0e+00 0.00e+00 0.00e+00 826860/830991/833954/836869/832703/814828/828726/843739/819562/827860/831537/839950/835025/828681/844172/827542/843738/826859/838122/842931/821353/824241/834078/824763/827238/842139/835085/836310/842880/818002/834895/818506/835012/818409/818520/818964/831560/843985/818837/816436/824786/844074/824740/829671/842527/837428/822740/838043/827834/822809/829301/828420/843527/836277/841609/824608/825139/818549/839735/842205/829946/838695/818471/844283/819554/831074/828064/829572/821416/817013/839580/818287/828342/824082/832026/829700/834806/837344/838363/821723/830781/837581/835238/832215/826916/821596/839125/816285/838324/837482/820355/819044/835976/841587/832070/831444/820538/829955/828540/831866/839051/842864/830545/828524/833901/823892/835570/843350/834652/841044/829328/826772/831563/816551/821373/831126/843321/818232/819740/836242/831479/842275/836505/836716/828131/835735/817294/814675/818576/834337/839139/821114/834465/836729/834780 135
67 Activated GO:0070482 response to oxygen levels 67/4260 100/17755 0.0e+00 0.00e+00 0.00e+00 829327/822481/843716/839180/817180/817197/838508/824807/820165/831065/833986/829495/833998/829444/840977/816103/823393/816295/830788/831364/835828/821112/840399/832596/839183/842139/828081/819365/818002/832206/832524/828854/844047/837098/832750/816859/827694/841797/836499/826603/837800/829927/821193/835855/818221/824408/824745/827786/832838/838301/829772/830979/827687/836614/823964/825805/817155/829404/835587/841409/843565/825414/827338/840184/843568/829161/838940 67
68 Activated GO:0036293 response to decreased oxygen levels 66/4260 99/17755 0.0e+00 0.00e+00 0.00e+00 829327/822481/843716/839180/817180/817197/838508/824807/820165/831065/833986/829495/833998/829444/840977/816103/823393/816295/830788/831364/835828/821112/840399/832596/839183/842139/828081/819365/818002/832206/832524/828854/844047/837098/832750/816859/827694/841797/836499/826603/837800/829927/821193/835855/818221/824408/824745/827786/832838/838301/829772/830979/827687/836614/823964/825805/817155/829404/835587/841409/843565/825414/840184/843568/829161/838940 66
98 Activated GO:0036294 cellular response to decreased oxygen levels 22/4260 25/17755 0.0e+00 0.00e+00 0.00e+00 829327/839180/817197/838508/835828/832596/839183/842139/837098/832750/816859/827694/841797/829927/821193/835855/824745/836614/817155/825414/843568/829161 22
99 Activated GO:0071453 cellular response to oxygen levels 22/4260 25/17755 0.0e+00 0.00e+00 0.00e+00 829327/839180/817197/838508/835828/832596/839183/842139/837098/832750/816859/827694/841797/829927/821193/835855/824745/836614/817155/825414/843568/829161 22
107 Activated GO:0072329 monocarboxylic acid catabolic process 96/4260 224/17755 0.0e+00 0.00e+00 0.00e+00 832820/820860/817496/821135/834660/838288/824755/842170/820956/835494/834871/814770/843947/821732/824336/835250/818477/818879/839691/843600/820462/818239/830525/827088/830283/829587/843329/827381/816714/839816/839621/824423/831443/837099/819158/819730/827314/820331/817251/832812/817876/831024/837431/825235/837757/826792/829268/836635/819671/829433/817683/842864/844320/841072/820083/837094/824273/817145/817996/832260/820016/836032/818584/829022/818181/820593/835159/824111/824798/816808/836144/834346/821815/830373/842741/842073/838989/834552/827968/829025/825044/817175/829059/819390/819767/836227/825452/837166/837088/842254/820298/834026/838782/836138/838946/814630 96
138 Activated GO:0000302 response to reactive oxygen species 113/4260 314/17755 1.0e-06 1.18e-05 9.60e-06 835707/831856/824802/833957/834244/821047/832820/837429/826718/841849/838122/830377/834678/843660/821135/826884/827016/821225/819331/835656/836884/816478/842069/815160/829055/827713/843584/817598/828641/837076/835341/819995/843389/827786/827463/833755/821239/837075/842769/823954/829641/820049/839621/823846/816578/831076/844087/829539/838652/818257/823964/835019/817170/835218/838224/817155/840148/829915/828053/835364/828714/819784/828623/818562/825476/833486/838544/837405/840115/837094/833881/828713/826771/841789/831075/828881/843013/824739/820473/820564/827952/836011/826870/843258/821921/835106/826616/819235/831993/832267/816475/819402/838212/818868/836617/829059/828481/830587/827412/821625/827903/819767/822041/814729/836572/843439/820985/831377/839886/826304/844178/823994/817049 113
142 Activated GO:0000305 response to oxygen radical 25/4260 43/17755 1.7e-06 1.88e-05 1.53e-05 824802/833957/841849/827016/827786/842769/839621/829539/817170/838224/840148/828714/825476/837405/840115/837094/833881/824739/843258/819235/816475/829059/830587/821625/827903 25
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------- ---------- ---------- -------- --------- ---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
82 Activated GO:0009267 cellular response to starvation 126/4260 285/17755 0.0e+00 0.000000 0.0000000 843656/838739/817604/831147/824865/838478/818723/842774/821047/814828/824647/825779/824864/843221/834943/819332/824124/823888/834895/839444/840188/818409/816227/824838/821135/839214/815147/835562/843161/820457/824448/842527/820078/843816/821357/821045/829251/816833/820956/828417/841398/832137/818013/829943/823918/826630/838910/840181/823857/835947/841856/827713/819869/818477/819165/818348/827956/837502/836480/819995/828232/839559/843329/834110/830923/843632/842387/831795/820547/839621/835190/838907/814853/835902/819730/838651/838503/819609/838652/817482/828399/825433/843081/830518/825868/842043/842563/828053/826833/830293/827118/825050/826456/825400/820723/820898/825817/838479/829172/821005/822075/819125/843497/843280/828713/830422/821725/840139/843022/843453/819120/824148/818497/837365/834489/819329/843143/820932/840957/829440/839349/831684/831787/821145/829315/817207 126
85 Activated GO:0042594 response to starvation 127/4260 292/17755 0.0e+00 0.000000 0.0000000 843656/838739/817604/831147/824865/838478/818723/842774/821047/814828/824647/825779/824864/843221/834943/819332/824124/823888/834895/839444/840188/818409/816227/824838/821135/839214/815147/835562/843161/820457/824448/842527/820078/843816/821357/821045/829251/816833/820956/828417/841398/832137/818013/829943/823918/826630/838910/840181/823857/835947/841856/827713/819869/818477/819165/818348/827956/837502/836480/819995/828232/839559/843329/834110/830923/843632/842387/831795/820547/839621/835190/838907/814853/835902/819730/838651/838503/819609/838652/817482/828399/825433/843081/830518/825868/842043/842563/828053/826833/830293/827118/825050/826456/825400/820723/820898/825817/838479/829172/821005/822075/819125/843497/843280/828713/830422/821725/840139/843022/843453/819120/824148/818497/837365/834489/819329/843143/820932/840957/829440/839349/825452/831684/831787/821145/829315/817207 127
424 Repressed GO:0010106 cellular response to iron ion starvation 43/3824 114/17755 5.8e-05 0.000442 0.0003465 835406/841610/836187/837830/828083/841611/829140/821171/828707/836026/844069/837028/816415/822190/821314/823713/839235/827712/821884/831650/817525/837430/832353/814682/834090/836071/817242/829190/828612/834851/843552/824510/832700/821829/837389/815896/828246/826842/832119/834049/834794/819425/822334 43[1] "----------------------------------------------------------------"
[1] "------------------------CNF" "------------------------CNf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------- ---------- ---------- --------- ---------- ---------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
3 Activated GO:0010243 response to organonitrogen compound 165/2809 436/17755 0.000000 0.0000000 0.0000000 835353/824257/817778/842923/817197/824807/817628/822447/821904/829308/818964/844421/835860/822298/843716/818709/823902/827080/839126/823751/825513/820901/825779/818404/819248/834545/836103/826427/838438/842428/830457/828771/836533/834429/843842/824188/824893/817084/821037/823892/830902/836610/842931/832320/835012/826730/828642/843006/832660/832750/834768/843777/828455/835855/820033/838182/821225/827892/814903/828418/819093/818171/817923/844423/832662/840317/816436/843993/816209/815862/823560/829100/823752/829379/837277/828927/836277/843192/830840/824115/816227/820264/838501/28717292/822529/832524/818933/840098/814985/841595/828718/835828/817513/839265/839026/818588/824486/824844/834646/818548/829700/833727/827834/835975/817155/838122/825077/828420/828559/843584/818837/823964/842527/818429/818549/836099/841609/844033/839345/837224/825291/841587/820357/824629/843500/828929/836739/843350/835638/816899/838314/828381/836372/833755/844163/816864/816384/836797/824408/824608/824516/837800/821239/830396/839733/828836/828481/814817/837428/821495/831700/839735/830121/837878/830401/838353/823639/829103/841496/826884/829160/827622/829442/836753/839184 165
145 Activated GO:2001057 reactive nitrogen species metabolic process 9/2809 16/17755 0.000242 0.0025682 0.0020394 842958/831519/833738/835427/840630/840115/833755/821050/842935 9
244 Repressed GO:0015706 nitrate transport 73/3013 202/17755 0.000000 0.0000000 0.0000000 829140/838209/828707/835406/841610/828083/836071/821829/836198/816415/834049/837830/829190/820894/838207/817525/837028/821314/844069/823713/821884/841611/828612/819088/827470/816779/832353/834851/843359/822190/831262/814682/831650/817787/837430/829129/817637/836531/838365/821171/817242/821897/820078/844272/816639/842563/828805/838856/841650/843022/823707/832670/822334/820591/832119/836026/828246/834090/843552/831599/834463/834489/819045/834584/817515/829832/817223/817312/843377/841477/822411/835148/821833 73
268 Repressed GO:0010167 response to nitrate 69/3013 195/17755 0.000000 0.0000000 0.0000000 829140/828707/835406/841610/836447/828083/836071/821829/836198/816415/834049/837830/829190/820894/837095/817525/837028/821314/844069/823713/821884/841611/828612/819088/816779/832353/834851/843359/822190/831262/814682/831650/817787/837430/829129/817637/836531/838365/821171/817242/821897/820078/844272/816639/842563/828805/838856/841650/843022/832670/822334/820591/832119/836026/828246/834090/843552/831599/834489/819045/834584/817223/817312/843377/841477/822411/828502/835148/821833 69
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ---------------------------------------------------- ---------- ---------- --------- ---------- ---------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
49 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 69/2809 180/17755 0.00e+00 0.0000000 0.0000000 835353/817197/824807/817628/822298/843716/823902/827080/822481/817180/831065/838438/830457/843842/824893/830788/839523/821037/823892/830902/832320/824838/843006/832750/843777/820033/833998/814903/818171/844423/816436/816103/815997/826796/837277/822529/832524/823393/840098/814985/829772/824024/838122/818903/816295/823964/818429/819732/839345/835981/820357/824629/835638/816899/826735/824408/844047/837800/837907/840253/828481/839735/828854/829103/826884/838044/834015/829442/820165 69
51 Activated GO:0042743 hydrogen peroxide metabolic process 102/2809 325/17755 0.00e+00 0.0000000 0.0000000 835353/817197/824807/817628/822298/843716/823902/827080/841567/822481/817180/839747/831065/838438/839476/830457/843842/824893/830788/839523/821037/823892/830902/832320/824838/843006/814849/832750/840895/843777/820033/833998/814903/818171/844423/816436/816103/815997/826796/841122/832502/837277/832474/820630/829558/822529/831227/832524/824454/823393/840098/814985/829772/832001/834842/824024/827563/837384/838122/818903/816295/832233/828027/823964/818429/819732/839345/838712/835981/820357/824629/817755/835638/816899/826735/816672/837598/824408/823795/844047/842935/837800/830017/842317/836400/837907/835017/825831/842344/838651/840253/828481/819321/821265/839735/828854/829103/826884/838044/834015/829442/820165 102
64 Activated GO:0001666 response to hypoxia 40/2809 96/17755 0.00e+00 0.0000000 0.0000000 817197/829327/824807/840399/843716/822481/817180/837098/831065/839180/828081/827694/830788/842139/826603/832750/835855/833998/829927/839183/816103/832524/823393/829772/835828/817155/816295/823964/827687/832596/824408/844047/837800/816859/843565/818002/840184/828854/835844/820165 40
67 Activated GO:0009404 toxin metabolic process 68/2809 215/17755 0.00e+00 0.0000001 0.0000001 831174/817495/843328/824807/817628/822447/814822/843799/822298/817566/827542/828228/838288/841432/819827/838289/817494/831895/843329/827860/828470/837075/828642/817753/837543/828834/828753/839515/818902/833862/823932/839950/843192/827972/831688/844172/827238/820214/822252/827931/831325/827834/817155/839691/818767/818879/820083/837542/842527/818429/824082/843947/843350/823927/839295/834871/821508/820956/817683/836802/842261/814770/837431/841427/839920/817591/817496/844169 68
80 Activated GO:0009407 toxin catabolic process 62/2809 203/17755 1.00e-07 0.0000019 0.0000015 831174/817495/843328/822447/814822/843799/817566/827542/828228/838288/841432/819827/838289/817494/831895/843329/827860/828470/837075/828642/817753/837543/828753/839515/833862/823932/839950/843192/827972/831688/844172/827238/820214/822252/827931/831325/827834/817155/839691/818767/818879/820083/837542/842527/824082/843947/843350/823927/839295/834871/821508/820956/817683/836802/842261/814770/837431/841427/839920/817591/817496/844169 62
81 Activated GO:0098754 detoxification 65/2809 218/17755 1.00e-07 0.0000025 0.0000020 831174/817495/843328/822447/814822/843799/817566/827542/842650/828228/838288/832290/824802/841432/819827/838289/817494/831895/843329/827860/828470/837075/828642/817753/837543/828753/839515/833862/823932/839950/843192/827972/831688/844172/827238/820214/822252/827931/831325/827834/817155/839691/818767/818879/820083/837542/842527/824082/843947/843350/823927/839295/834871/821508/820956/817683/836802/842261/814770/837431/841427/839920/817591/817496/844169 65
88 Activated GO:0071456 cellular response to hypoxia 14/2809 23/17755 1.20e-06 0.0000206 0.0000163 817197/829327/837098/839180/827694/842139/832750/835855/829927/839183/835828/817155/832596/816859 14
115 Activated GO:0009636 response to toxic substance 99/2809 419/17755 1.69e-05 0.0002262 0.0001796 831174/817495/843328/822447/814822/843799/831856/817566/827542/842650/828228/838288/832290/824802/841432/819827/838289/835218/817494/835341/831895/843329/817598/827860/828470/837075/821047/828642/817753/837543/834678/828753/843027/839515/833862/828641/823932/839950/831076/843192/837429/827972/831688/826849/844172/827238/820214/844087/822252/837076/827931/831325/820049/827834/817155/839691/818767/818879/820083/836884/837542/842527/824082/843660/829055/843947/843350/833755/823927/839295/844178/823954/834871/835364/821508/820956/832476/817683/836802/842261/827952/821239/818257/819331/814770/821935/837431/841789/841427/843771/828481/839920/817591/817052/817496/844169/823845/831917/841924 99
322 Repressed GO:0006733 oxidoreduction coenzyme metabolic process 111/3013 422/17755 7.00e-07 0.0000070 0.0000055 822259/838632/824077/828439/837095/818255/827908/843546/821560/828409/836525/837304/816765/831100/822343/830399/836213/829376/827028/830052/817637/826716/844174/815120/829438/837113/824510/830336/816732/822604/841512/844228/820980/832096/825376/829697/838075/839031/837639/827145/841447/828805/819639/839273/832130/842905/826551/820406/825316/836783/835355/831039/835157/820775/829382/836470/819778/836110/834749/829314/843414/841627/835035/830699/824526/841757/816943/824459/831252/821939/833559/839527/825360/830517/820639/825797/821951/838388/838927/842536/824246/819187/821659/843871/832195/831020/828995/829220/818978/830008/820628/829124/820461/830724/822411/828213/837731/836895/829679/825075/814779/838622/830909/819261/819295/824710/821084/828326/819011/827230/821584 111
351 Repressed GO:0015980 energy derivation by oxidation of organic compounds 30/3013 83/17755 2.05e-05 0.0001733 0.0001355 828688/822343/835179/820163/832096/838075/822359/834065/828805/820406/835157/829382/828130/819778/834749/824439/841627/814736/818860/829124/830024/831998/829679/816218/814638/831884/819261/824710/831049/828326 30
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- -------- --------- --------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
43 Activated GO:0072593 reactive oxygen species metabolic process 118/2809 364/17755 0.0e+00 0.0e+00 0.00e+00 835353/836868/817197/824807/817628/822298/843716/823902/827080/841567/822481/817180/824802/839747/831065/824072/838438/836373/839476/824073/830457/842958/843842/824893/830788/839523/821037/823892/830902/832320/824838/843006/814849/832750/840895/843777/820033/833998/814903/818171/844423/816436/816103/815997/826796/841122/832502/837277/832474/820630/829558/822529/831227/820214/832524/824454/823393/840098/816847/814985/829772/832001/834842/824024/827563/837384/838122/818903/816295/832233/828027/817170/823964/818429/819732/839345/838712/835981/820357/824629/829641/840630/817755/835638/816899/840115/836372/833755/826735/816672/837598/824408/823795/844047/842935/837800/830017/842317/836400/837907/835017/825831/842344/838651/840253/828481/819321/821265/839735/828854/844282/829103/826884/838044/831344/834015/829442/820165 118
46 Activated GO:2000377 regulation of reactive oxygen species metabolic process 76/2809 199/17755 0.0e+00 0.0e+00 0.00e+00 835353/836868/817197/824807/817628/822298/843716/823902/827080/822481/817180/831065/838438/830457/842958/843842/824893/830788/839523/821037/823892/830902/832320/824838/843006/832750/843777/820033/833998/814903/818171/844423/816436/816103/815997/826796/837277/822529/820214/832524/823393/840098/816847/814985/829772/824024/838122/818903/816295/823964/818429/819732/839345/835981/820357/824629/835638/816899/840115/833755/826735/824408/844047/837800/837907/840253/828481/839735/828854/829103/826884/838044/831344/834015/829442/820165 76
56 Activated GO:0046942 carboxylic acid transport 87/2809 268/17755 0.0e+00 0.0e+00 0.00e+00 828064/826860/843738/826859/833954/828726/818964/824241/830991/835025/836869/827542/822809/821353/842880/832703/828681/819562/843985/834895/843739/838363/842139/827860/823892/842931/835012/831444/844074/818520/836310/814828/816436/839950/834078/836277/829301/825139/844172/817013/827238/832026/838043/843527/828342/839139/829700/837581/827834/838122/821416/828420/819554/818232/818837/835238/843321/836716/831537/837363/842527/818549/824082/841609/841587/821723/843350/837482/831866/816551/824608/835976/832215/829671/839580/837344/818002/824763/837428/821596/816285/814675/839735/835085/834337/823402/826772 87
62 Activated GO:0036293 response to decreased oxygen levels 41/2809 99/17755 0.0e+00 0.0e+00 0.00e+00 817197/829327/824807/840399/843716/822481/817180/837098/831065/839180/828081/827694/830788/842139/826603/819365/832750/835855/833998/829927/839183/816103/832524/823393/829772/835828/817155/816295/823964/827687/832596/824408/844047/837800/816859/843565/818002/840184/828854/835844/820165 41
65 Activated GO:0070482 response to oxygen levels 41/2809 100/17755 0.0e+00 0.0e+00 0.00e+00 817197/829327/824807/840399/843716/822481/817180/837098/831065/839180/828081/827694/830788/842139/826603/819365/832750/835855/833998/829927/839183/816103/832524/823393/829772/835828/817155/816295/823964/827687/832596/824408/844047/837800/816859/843565/818002/840184/828854/835844/820165 41
99 Activated GO:0036294 cellular response to decreased oxygen levels 14/2809 25/17755 4.7e-06 7.2e-05 5.71e-05 817197/829327/837098/839180/827694/842139/832750/835855/829927/839183/835828/817155/832596/816859 14
100 Activated GO:0071453 cellular response to oxygen levels 14/2809 25/17755 4.7e-06 7.2e-05 5.71e-05 817197/829327/837098/839180/827694/842139/832750/835855/829927/839183/835828/817155/832596/816859 14
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------- ---------- ---------- ---------- ---------- ---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
74 Activated GO:0009267 cellular response to starvation 82/2809 285/17755 0.0000000 0.0000004 0.0000003 818723/819995/823888/824864/830293/824865/838739/834943/823918/821357/838910/820457/843816/831147/842774/843656/840181/825779/843221/815147/824448/828417/819332/834895/817482/843329/829251/821047/824838/830816/838478/814828/824647/816833/840188/821045/827118/830923/842387/826630/825433/818477/835562/817943/814853/816227/843161/835902/829943/841856/829321/825868/836478/842043/844135/821924/839559/820898/842527/836263/839621/836480/820547/822159/820956/843081/831787/821145/819869/837965/827713/838850/838651/820932/843280/820113/839214/817604/828232/826842/826456/823679 82
78 Activated GO:0042594 response to starvation 82/2809 292/17755 0.0000001 0.0000012 0.0000010 818723/819995/823888/824864/830293/824865/838739/834943/823918/821357/838910/820457/843816/831147/842774/843656/840181/825779/843221/815147/824448/828417/819332/834895/817482/843329/829251/821047/824838/830816/838478/814828/824647/816833/840188/821045/827118/830923/842387/826630/825433/818477/835562/817943/814853/816227/843161/835902/829943/841856/829321/825868/836478/842043/844135/821924/839559/820898/842527/836263/839621/836480/820547/822159/820956/843081/831787/821145/819869/837965/827713/838850/838651/820932/843280/820113/839214/817604/828232/826842/826456/823679 82
274 Repressed GO:0010106 cellular response to iron ion starvation 47/3013 114/17755 0.0000000 0.0000000 0.0000000 829140/828707/835406/841610/828083/836071/821829/836187/816415/834049/837830/829190/817525/837028/821314/844069/823713/839235/821884/841611/828612/832353/834851/822190/814682/831650/817787/837430/824510/821171/817242/821897/820078/816639/842563/843022/832670/822334/832119/836026/828246/834090/843552/834489/817223/827956/841477 47
400 Repressed GO:0042594 response to starvation 73/3013 292/17755 0.0002887 0.0019357 0.0015130 829140/828707/835406/841610/828083/836071/821829/836187/825442/816415/834049/837830/829190/825836/817525/837028/821314/837890/844069/823713/839235/821884/841611/828612/832163/840424/814855/832353/834851/823576/822190/814682/831650/821313/817787/837430/844174/829661/824125/824510/821171/815657/831888/842944/817242/816141/814714/821897/820078/839907/816639/842563/842604/843022/832670/822334/816700/827773/832119/836026/823557/828246/834090/843552/836210/818860/824612/834489/817223/827956/841477/837820/825473 73[1] "----------------------------------------------------------------"
[1] "------------------------CnF" "------------------------Cnf"
[1] "----------------------------------------------------------------"
[1] "------------------------ Up regulated --------------------------"
[1] "------------------------ Down regulated --------------------------"
[1] "------------------------ Comparison --------------------------"
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- --------------------------------------- ---------- ---------- ---------- ---------- ---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
2 Activated GO:0010243 response to organonitrogen compound 282/4194 436/17755 0.0000000 0.0000000 0.0000000 817197/843192/822298/817778/823902/817628/825513/842923/818171/821904/828418/835353/818404/843777/844421/839184/824257/818709/823751/843993/825077/836610/822447/832750/817084/835828/843842/828642/843006/824893/826427/827080/832662/830457/820901/817194/838122/835012/842527/838483/825779/816384/838501/816209/843716/842931/828455/829308/835798/831700/839026/843584/832524/829442/839126/834545/836533/828718/843810/839735/818429/830902/821037/829700/824750/839345/827834/838182/830840/836103/838438/818837/838314/822529/816436/824608/824188/824629/832660/840897/821225/816864/828481/824115/820357/818549/824255/28720712/816227/819248/818964/828771/836587/824011/824807/829100/832320/827831/817923/837033/824528/835860/823560/815943/834603/839265/818409/834768/843350/820033/822119/835855/828927/841496/842428/816899/829563/838310/837224/826730/818548/821901/828420/821495/844177/836739/821239/823752/841587/823892/836277/843500/818933/815862/840317/834836/828381/828348/832801/825399/844033/841595/842430/830401/814903/829536/823846/814985/833727/831037/840098/843939/844163/28717292/824486/827622/829103/824844/837277/826884/824408/836797/832812/823400/824709/837428/844423/817555/824516/836753/818588/830121/819296/841609/836655/818605/831854/823964/816909/819260/818166/836372/834273/838521/828929/826738/830396/816283/823639/828950/818287/820355/842281/839846/839722/817935/818194/824446/825291/825104/820249/824746/827435/835638/838639/834646/829915/821535/843998/826409/820053/817936/829539/837528/837414/838591/837673/827463/827630/831546/834429/818762/817513/831345/827088/818319/825905/821134/827464/836242/843492/837800/824277/816192/814817/821717/827706/843481/818670/827996/817039/837724/825189/819056/821667/815211/826368/818025/816783/833881/817115/820419/838353/824764/829379/837178/820019/824922/843786/822147/820264/824920/830058/834923/837878/829597/819093/832170/836751/816913/819684/820924/836322/828713/824580/836865/820233/819715/816318/815949/817312/836433 282
121 Activated GO:0010167 response to nitrate 84/4194 195/17755 0.0000000 0.0000000 0.0000000 838478/828255/824238/824004/827238/819995/843816/836533/820429/832794/827834/835085/824608/843660/843221/837327/821135/838479/826859/816833/837274/844140/844135/830923/829479/842043/825050/837482/825868/843377/829321/843740/819632/839559/840139/826630/824082/836480/815907/832162/825400/842563/823857/820723/828131/829142/831117/827713/828426/835190/820352/818523/818497/830518/836073/830599/837724/816055/820078/819056/843497/828805/836478/821725/823679/826848/824060/829400/821309/832468/831787/837502/843143/837868/830422/820085/828542/821832/837867/828001/817445/819329/834464/817312 84
123 Activated GO:0015706 nitrate transport 86/4194 202/17755 0.0000000 0.0000000 0.0000000 838478/843656/823641/824238/827238/819995/843816/837328/836533/820429/832794/827834/835085/824608/843660/843221/837327/821135/838479/826859/816833/837274/844135/830923/829479/842043/825050/837482/825868/843323/843377/829321/843740/819632/840139/826630/824082/844274/836480/836199/832162/825400/842563/823857/820723/828131/829142/831117/827713/828426/835190/820352/818523/818497/830518/836073/830599/837724/816055/820078/819056/843497/828805/836478/821725/823679/818384/826848/824060/829400/821309/832468/831787/837502/843143/837868/830422/820085/821832/837867/828001/817445/819329/834464/817312/830883 86
212 Activated GO:1901699 cellular response to nitrogen compound 16/4194 30/17755 0.0004114 0.0030484 0.0024265 835707/819995/830377/842069/821135/817923/835656/824516/816909/842281/815907/820473/827713/821717/833873/816478 16
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------- ---------- ---------- -------- --------- --------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
54 Activated GO:0010310 regulation of hydrogen peroxide metabolic process 111/4194 180/17755 0.0e+00 0.00e+00 0.00e+00 817197/822298/823902/817628/818171/835353/843777/839523/832750/843842/843006/824893/827080/833998/830457/817180/838122/843716/832524/829442/822481/843810/839735/818429/830902/821037/839345/839748/826735/838438/822529/816436/824629/831065/828481/820357/824807/830788/832320/815943/818409/820033/826796/816899/818221/844177/840254/823892/823393/834015/814903/814985/840098/829103/837277/826884/824408/815997/829772/816103/844423/823964/828444/819732/818166/834273/827062/824838/820355/842281/839846/840253/829444/818348/824746/835981/827786/835638/824024/841409/838591/837673/816295/821134/836242/837800/843803/818670/827996/837907/817039/833986/825805/825189/818854/819056/837178/830058/831364/829597/832170/838044/820608/836751/838554/820924/828713/815949/828854/820165/829495 111
68 Activated GO:0042743 hydrogen peroxide metabolic process 156/4194 325/17755 0.0e+00 0.00e+00 0.00e+00 817197/822298/823902/817628/818171/835353/843777/839523/832750/843842/843006/824893/839476/827080/833998/830457/841567/817180/838122/843716/832524/829442/822481/843810/839735/818429/830902/821037/839345/829558/839748/826735/832474/838438/822529/816436/839747/824629/834842/831065/828481/820357/824807/827563/830788/832320/831227/815943/818409/820033/824454/826796/816899/818221/844177/840254/823892/829452/840895/823393/834015/842935/814849/832233/814903/841122/814985/832502/838652/840098/829103/837277/826884/824408/815997/829772/816103/844423/825246/816672/820630/823964/828444/819732/818166/834273/827062/842344/832001/824838/823795/820355/842281/816775/839846/837384/840253/829444/818348/824746/835981/827786/835638/824024/841409/819272/829460/838591/837673/816295/825831/821134/836242/837800/843803/838712/842379/842697/827228/817755/838651/831798/818670/827996/842710/819321/837907/817039/833986/825805/825189/818854/819056/836158/822402/837178/830017/830058/831364/829597/832403/832170/838044/820608/836751/838554/818859/818766/820924/828713/815949/828854/842317/820165/843078/829495 156
69 Activated GO:0009404 toxin metabolic process 114/4194 215/17755 0.0e+00 0.00e+00 0.00e+00 817495/843192/822298/817628/843799/817566/818902/839950/827542/831174/838288/822447/828642/827860/839295/823932/817753/819827/814822/842527/827931/831560/828228/831895/827238/839515/843328/817494/817496/818429/833862/828470/827834/824255/834871/824807/844172/818143/844169/843350/837075/820083/844173/818767/843329/837543/828753/822252/836072/818879/820564/837415/841432/823927/818403/829955/843947/827972/814770/838965/831688/830154/838289/816040/820214/817876/839691/820956/818269/824082/831024/828834/818013/831325/822003/842261/836802/839920/817683/829025/829338/817497/837431/841409/819314/831586/826765/821784/827088/817491/819555/817498/832420/821508/835941/835613/834056/844081/821060/843864/818031/835379/837575/836368/842098/830019/844114/821208/817591/841072/817715/814769/838609/830144 114
74 Activated GO:0009407 toxin catabolic process 107/4194 203/17755 0.0e+00 0.00e+00 0.00e+00 817495/843192/843799/817566/839950/827542/831174/838288/822447/828642/827860/839295/823932/817753/819827/814822/842527/827931/831560/828228/831895/827238/839515/843328/817494/817496/833862/828470/827834/824255/834871/844172/818143/844169/843350/837075/820083/844173/818767/843329/837543/828753/822252/836072/818879/820564/837415/841432/823927/818403/829955/843947/827972/814770/838965/831688/838289/816040/820214/817876/839691/820956/818269/824082/831024/818013/831325/822003/842261/836802/839920/817683/829025/829338/817497/837431/841409/819314/831586/826765/821784/827088/817491/819555/817498/832420/821508/835941/835613/834056/844081/821060/843864/818031/835379/837575/836368/842098/830019/844114/821208/817591/841072/817715/814769/838609/830144 107
75 Activated GO:0098754 detoxification 112/4194 218/17755 0.0e+00 0.00e+00 0.00e+00 817495/832290/843192/843799/817566/839950/827542/831174/838288/822447/828642/827860/839295/823932/817753/819827/814822/842527/827931/831560/828228/831895/827238/842650/839515/824802/843328/817494/817496/833862/828470/827834/824255/834871/844172/818143/844169/843350/837075/820083/844173/818767/843329/837543/828753/825050/822252/836072/818879/820564/837415/841432/823927/818403/829955/843947/827972/814770/838965/831688/838289/816040/820214/817876/839691/820956/818269/824082/831024/818013/831325/822003/842261/836802/839920/817683/829025/829338/817497/837431/841409/819314/831586/826765/821784/827088/817491/819555/817498/832420/821508/837405/835941/835613/834056/844081/821060/843864/818031/835379/837575/836368/842098/830019/844114/821208/817591/841072/817715/814769/838609/830144 112
90 Activated GO:0009636 response to toxic substance 170/4194 419/17755 0.0e+00 0.00e+00 0.00e+00 817495/832290/843192/843799/817566/839950/831856/827542/831174/834678/838288/822447/828642/843027/827860/839295/823932/817753/819827/814822/842527/827931/831560/828228/831895/827238/821047/842650/819331/839515/824802/843328/817494/817496/833862/828470/827834/843660/828481/824255/834871/844172/818143/844169/843350/828641/831076/837075/844087/820083/835341/836884/844173/821239/818767/843329/837543/828753/825050/822252/836072/818879/820564/837415/841432/817598/823927/818403/823846/829955/843947/827972/814770/838652/838965/831688/843389/829055/838289/816040/820214/837429/817876/835555/839691/820956/818269/824082/836011/831024/818013/835364/831325/822003/820049/842261/836802/835218/839920/841082/817683/837076/831917/829025/818257/829338/817497/829915/837431/841409/819314/835019/823954/831586/831993/826765/821784/827088/818868/817491/819555/817498/836061/820102/835106/827952/832420/821508/837405/835941/835613/834056/844178/817049/844081/821060/844385/821935/815211/843864/820091/832267/840454/818031/842110/835379/839886/830625/816757/837575/827039/836368/842098/829054/827367/830019/841789/844114/821208/817591/826304/841072/817715/828713/832476/814769/838609/830144/827912/816578 170
96 Activated GO:0001666 response to hypoxia 56/4194 96/17755 0.0e+00 0.00e+00 0.00e+00 829327/817197/839183/839180/832750/835828/833998/817180/842139/816859/843716/827694/832524/828081/832596/836614/840399/829927/822481/838508/826603/824745/831065/837098/824807/827687/830788/835855/818221/838016/836499/832838/841797/823393/821193/824408/829772/816103/823964/838017/838301/829444/827786/841409/816295/820339/837800/833986/825805/831364/818002/827960/828854/830979/820165/829495 56
107 Activated GO:0006979 response to oxidative stress 172/4194 470/17755 0.0e+00 0.00e+00 0.00e+00 832145/828418/826718/831856/834678/835707/833957/834244/838122/838483/832820/831560/837894/842342/821047/819995/841849/819331/839515/843584/824802/817494/830377/842069/832109/842114/836103/843660/821225/828481/821135/824919/822833/835102/830118/827831/822119/828641/831076/835656/818566/837075/844087/826730/835341/836884/844177/821239/827016/838052/820564/815160/821578/817598/823846/824493/842769/838652/838752/843389/829055/837429/826884/820728/837252/829641/835555/838224/837904/815023/839621/836011/816702/818588/823964/829730/825476/835571/835364/833777/820049/828714/836286/835218/818280/841082/837076/831917/827786/829623/818257/831563/828616/829915/819314/824739/833779/840004/835019/823954/829539/837528/838544/831993/820473/827463/821921/837531/827713/840115/821784/818868/831559/836061/820102/819320/835106/816192/827952/837405/833873/835756/829059/841804/843398/844178/817049/841391/830587/815211/820091/819784/833881/817115/817170/828805/832267/840454/843708/825452/843258/842110/832147/839886/826807/830625/818562/816757/819235/818685/821625/827039/815903/829652/829054/827367/841789/821974/818167/826304/819767/830638/837421/825817/820292/828713/831562/816475/832476/816478/834464/816578 172
110 Activated GO:0071456 cellular response to hypoxia 20/4194 23/17755 0.0e+00 0.00e+00 0.00e+00 829327/817197/839183/839180/832750/835828/842139/816859/827694/832596/836614/829927/838508/824745/837098/835855/838016/841797/821193/838017 20
116 Activated GO:0034440 lipid oxidation 81/4194 182/17755 0.0e+00 0.00e+00 0.00e+00 841944/838288/832820/843584/817496/834660/838314/821135/834871/842170/827381/820083/843329/824755/843077/818879/839816/830283/844374/843947/814770/843600/826792/832812/817876/830525/839691/820956/835494/839621/831024/824336/820462/818239/836635/817683/837166/829025/819158/837431/824273/842864/829022/827314/834346/821784/827088/824423/824111/829587/817251/819671/832420/835941/829059/834056/829268/829433/841391/844385/842741/820593/825452/837099/835159/834946/842098/824798/830019/844114/832079/841072/819767/838989/822025/838609/837104/834552/836138/832345/830144 81
118 Activated GO:0019395 fatty acid oxidation 77/4194 172/17755 0.0e+00 0.00e+00 0.00e+00 838288/832820/817496/834660/821135/834871/842170/827381/820083/843329/824755/818879/839816/830283/844374/843947/814770/843600/826792/832812/817876/830525/839691/820956/835494/839621/831024/824336/820462/818239/836635/817683/837166/829025/819158/837431/824273/842864/829022/827314/834346/821784/827088/824423/824111/829587/817251/819671/832420/835941/829059/834056/829268/829433/841391/844385/842741/820593/825452/837099/835159/834946/842098/824798/830019/844114/832079/841072/819767/838989/822025/838609/837104/834552/836138/832345/830144 77
122 Activated GO:0006635 fatty acid beta-oxidation 75/4194 168/17755 0.0e+00 0.00e+00 0.00e+00 838288/832820/817496/834660/834871/842170/827381/820083/843329/824755/818879/839816/830283/844374/843947/814770/843600/826792/832812/817876/830525/839691/820956/835494/839621/831024/824336/820462/818239/836635/817683/837166/829025/819158/837431/824273/842864/829022/827314/834346/821784/827088/824423/824111/829587/817251/819671/832420/835941/829059/834056/829268/829433/841391/844385/842741/820593/825452/837099/835159/842098/824798/830019/844114/832079/841072/819767/838989/822025/838609/837104/834552/836138/832345/830144 75
129 Activated GO:0055114 oxidation-reduction process 132/4194 364/17755 0.0e+00 4.00e-07 3.00e-07 819288/840127/841944/838288/832820/816381/843584/821806/817496/818353/818772/834660/838314/825793/821135/842514/834871/842170/827381/820083/837848/843329/840895/824755/843077/818879/839816/830283/844374/843947/814770/840098/843600/826792/816359/832812/817876/830525/839691/820956/835494/839621/831024/835809/824336/820462/842893/825294/828388/842016/831183/818239/843129/818194/817208/836635/817683/824746/837166/829025/819158/828975/837431/820723/824273/838591/842864/829022/835538/827314/834346/821784/827088/824423/824111/822341/829587/819555/816953/817251/843942/838455/819042/819671/832619/824572/832420/820139/841793/835941/829059/827996/834056/829268/829433/841391/844385/842741/820593/828805/825452/841919/829490/837178/837099/835159/843308/819185/834946/831364/842098/836751/824798/830019/828893/844114/825180/841765/832079/841072/819767/838989/822025/834232/838609/837104/834552/838540/836138/814688/832345/830144 132
148 Activated GO:0000303 response to superoxide 25/4194 43/17755 1.3e-06 1.32e-05 1.05e-05 833957/841849/824802/827016/842769/838224/839621/825476/828714/827786/819314/824739/829539/840115/837405/829059/830587/833881/817170/843708/843258/819235/821625/818167/816475 25
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- -------------------------------------------------------- ---------- ---------- --------- ---------- ---------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
51 Activated GO:0046942 carboxylic acid transport 148/4194 268/17755 0.00e+00 0.0000000 0.0000000 832703/833954/830991/836869/821353/839950/824763/827542/826860/818471/831537/842880/827860/834895/828726/838122/835012/842527/831560/819562/842139/827238/828681/842931/836310/843739/835025/843738/839735/819554/834078/821723/829700/825139/827834/814828/824241/824740/835085/818837/816436/824608/824786/818549/844074/826859/818964/844172/821416/828064/831074/831444/838043/822809/818409/839125/843350/842205/828342/828420/829946/841587/823892/843985/832215/836277/829671/837482/837581/817013/843527/820538/829955/844283/818520/822740/829572/829301/836716/816285/835238/834337/837428/821596/824082/818506/841609/838695/835976/838324/819044/826916/841044/818287/820355/816551/838363/821373/835570/818232/828540/837344/830781/831563/832026/819314/839580/835735/842275/818576/828131/829142/834898/842864/843321/833901/823402/830545/836242/835391/836729/831866/832070/818523/833873/835941/834465/842477/831126/826772/821724/839051/829328/832514/837724/821060/829663/819809/835518/836505/828524/818002/821676/839112/844050/819715/817312/841307 148
56 Activated GO:2000377 regulation of reactive oxygen species metabolic process 116/4194 199/17755 0.00e+00 0.0000000 0.0000000 817197/822298/823902/817628/818171/835353/843777/839523/832750/843842/843006/824893/827080/833998/830457/817180/838122/836868/843716/832524/829442/822481/843810/839735/818429/830902/821037/839345/839748/826735/838438/822529/816436/824629/831065/828481/820357/824807/830788/832320/815943/818409/820033/826796/816899/818221/844177/840254/823892/823393/834015/814903/814985/840098/829103/837277/820214/826884/824408/815997/829772/816103/844423/823964/828444/819732/842958/818166/834273/827062/824838/820355/842281/839846/816847/840253/829444/818348/824746/835981/827786/835638/824024/841409/838591/837673/816295/840115/821134/836242/837800/843803/818670/827996/837907/817039/833986/825805/825189/818854/819056/837178/830058/831364/829597/832170/838044/820608/836751/838554/820924/828713/815949/828854/820165/829495 116
67 Activated GO:0072593 reactive oxygen species metabolic process 172/4194 364/17755 0.00e+00 0.0000000 0.0000000 817197/822298/823902/824073/817628/818171/835353/843777/839523/832750/843842/843006/824893/839476/827080/833998/830457/841567/817180/838122/836868/843716/824802/832524/829442/822481/843810/839735/818429/830902/821037/839345/829558/839748/826735/832474/838438/822529/816436/839747/824629/834842/831065/828481/820357/824072/824807/827563/830788/832320/831227/815943/818409/820033/836373/824454/826796/816899/818221/844177/840254/823892/829452/840895/823393/834015/842935/814849/832233/814903/841122/814985/832502/838652/840630/840098/829103/837277/820214/826884/824408/815997/829772/829641/816103/844423/825246/816672/820630/823964/828444/819732/842958/818166/836372/834273/827062/842344/832001/824838/823795/820355/842281/816775/839846/837384/816847/840253/829444/818348/824746/835981/827786/835638/824024/841409/819272/829460/838591/837673/816295/840115/825831/821134/836242/837800/843803/837405/838712/842379/842697/827228/817755/838651/831798/818670/827996/842710/819321/837907/817039/833986/825805/825189/818854/819056/836158/822402/817170/837178/844282/830017/830058/831364/829597/832403/832170/838044/820608/836751/838554/818859/818766/820924/828713/842580/815949/828854/842317/820165/843078/829495 172
94 Activated GO:0070482 response to oxygen levels 59/4194 100/17755 0.00e+00 0.0000000 0.0000000 829327/817197/839183/839180/832750/835828/833998/817180/842139/816859/843716/827694/832524/828081/832596/836614/840399/829927/822481/838508/826603/824745/831065/837098/824807/827687/830788/835855/818221/838016/836499/832838/841797/819365/823393/821193/824408/829772/816103/823964/838017/838301/829444/827786/841409/825414/816295/820339/837800/833986/825805/831364/827338/818002/827960/828854/830979/820165/829495 59
95 Activated GO:0036293 response to decreased oxygen levels 58/4194 99/17755 0.00e+00 0.0000000 0.0000000 829327/817197/839183/839180/832750/835828/833998/817180/842139/816859/843716/827694/832524/828081/832596/836614/840399/829927/822481/838508/826603/824745/831065/837098/824807/827687/830788/835855/818221/838016/836499/832838/841797/819365/823393/821193/824408/829772/816103/823964/838017/838301/829444/827786/841409/825414/816295/820339/837800/833986/825805/831364/818002/827960/828854/830979/820165/829495 58
106 Activated GO:0046395 carboxylic acid catabolic process 144/4194 376/17755 0.00e+00 0.0000000 0.0000000 823888/838288/824238/830457/818470/831666/816384/832820/829442/817496/833862/834660/821732/824629/820860/821135/822833/834871/814980/839883/841217/842170/836373/827381/820083/816630/844173/843329/829452/824755/818879/815160/842774/839816/830283/844374/843947/814770/818104/843600/826792/830154/818941/837385/832812/817876/830525/839691/837757/820956/835494/839621/831024/816672/824336/816714/823668/820462/818477/834273/831443/839508/829176/818239/838301/818280/822530/836635/817683/837166/829025/816412/819158/828616/837431/838362/837414/824273/842864/833613/829022/827314/834346/821784/827088/821861/824423/833436/820331/824111/829587/817251/843182/820568/819671/825235/832420/815101/835941/829549/829059/834056/829268/831684/829433/841391/844385/819056/826468/825386/842741/820593/825452/835250/837935/844282/837099/835159/832730/830058/824060/843750/824329/819390/837868/842098/824798/830019/844114/832044/832079/841072/819767/838989/822025/818181/834363/838609/837104/834552/836138/832345/830144/839022 144
112 Activated GO:0036294 cellular response to decreased oxygen levels 21/4194 25/17755 0.00e+00 0.0000000 0.0000000 829327/817197/839183/839180/832750/835828/842139/816859/827694/832596/836614/829927/838508/824745/837098/835855/838016/841797/821193/838017/825414 21
113 Activated GO:0071453 cellular response to oxygen levels 21/4194 25/17755 0.00e+00 0.0000000 0.0000000 829327/817197/839183/839180/832750/835828/842139/816859/827694/832596/836614/829927/838508/824745/837098/835855/838016/841797/821193/838017/825414 21
149 Activated GO:0000305 response to oxygen radical 25/4194 43/17755 1.30e-06 0.0000132 0.0000105 833957/841849/824802/827016/842769/838224/839621/825476/828714/827786/819314/824739/829539/840115/837405/829059/830587/833881/817170/843708/843258/819235/821625/818167/816475 25
172 Activated GO:0000302 response to reactive oxygen species 107/4194 314/17755 1.53e-05 0.0001396 0.0001111 826718/831856/834678/835707/833957/834244/838122/832820/821047/819995/841849/819331/843584/824802/830377/842069/843660/821225/828481/821135/828641/831076/835656/837075/844087/835341/836884/821239/827016/820564/815160/817598/823846/842769/838652/843389/829055/837429/826884/829641/835555/838224/839621/836011/823964/825476/835364/820049/828714/835218/837076/831917/827786/818257/829915/819314/824739/835019/823954/829539/838544/831993/820473/827463/821921/827713/840115/818868/836061/820102/835106/827952/837405/833873/829059/843398/844178/817049/830587/815211/820091/819784/833881/817170/832267/840454/843708/843258/842110/839886/830625/818562/816757/819235/821625/827039/829054/827367/841789/818167/826304/819767/828713/816475/832476/816478/816578 107
Cluster ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
---- ---------- ----------- ----------------------------------------- ---------- ---------- --------- ---------- ---------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------
71 Activated GO:0042594 response to starvation 140/4194 292/17755 0.00e+00 0.0000000 0.0000000 818723/824124/838478/824865/834943/843656/831147/824647/839444/823888/820457/834895/819332/830293/842527/825779/821357/821047/838739/815147/819995/843816/828417/823918/817604/838910/840188/824864/814828/843161/819165/814853/843221/821135/816227/838479/840181/824448/825433/829251/820547/835562/816833/818409/827118/843632/821045/844135/830923/843329/839214/842043/819869/832137/825050/825868/829321/843280/842774/826456/838652/829172/842387/828232/839559/835902/840139/820956/834110/826630/839621/830816/841398/835947/818477/818013/841856/829943/839349/824838/842281/836480/843081/838503/826833/818348/821145/825400/842563/823857/820723/822159/821005/822075/827713/817943/820898/835190/820339/818523/818497/830518/836263/838651/819125/831684/828399/820078/843205/843497/827956/836478/843708/825452/843453/838702/821725/820113/823679/820932/817207/843444/816757/831787/837502/843143/830422/820085/821208/841765/818678/827960/825817/819120/817445/828713/837965/819329/830662/838909 140
72 Activated GO:0009267 cellular response to starvation 137/4194 285/17755 0.00e+00 0.0000000 0.0000000 818723/824124/838478/824865/834943/843656/831147/824647/839444/823888/820457/834895/819332/830293/842527/825779/821357/821047/838739/815147/819995/843816/828417/823918/817604/838910/840188/824864/814828/843161/819165/814853/843221/821135/816227/838479/840181/824448/825433/829251/820547/835562/816833/818409/827118/843632/821045/844135/830923/843329/839214/842043/819869/832137/825050/825868/829321/843280/842774/826456/838652/829172/842387/828232/839559/835902/840139/820956/834110/826630/839621/830816/841398/835947/818477/818013/841856/829943/839349/824838/842281/836480/843081/838503/826833/818348/821145/825400/842563/823857/820723/822159/821005/822075/827713/817943/820898/835190/820339/818523/818497/830518/836263/838651/819125/831684/828399/820078/843205/843497/827956/836478/843708/843453/821725/820113/823679/820932/817207/843444/816757/831787/837502/843143/830422/820085/821208/841765/827960/825817/819120/817445/828713/837965/819329/830662/838909 137
350 Repressed GO:0010106 cellular response to iron ion starvation 40/3217 114/17755 1.15e-05 0.0001622 0.0001361 841610/835406/841611/829140/837830/837430/836187/828083/839235/816415/844069/837028/828707/821314/822190/823713/817525/821884/814682/836026/836071/824510/829190/817242/834090/828612/834851/821171/832353/831650/828246/837389/834049/843552/834794/826842/815896/821829/832119/821897 40